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Gene : AT5G46580 A. thaliana

DB identifier  ? AT5G46580 Secondary Identifier  ? locus:2142320
Brief Description  pentatricopeptide (PPR) repeat-containing protein
TAIR Computational Description  pentatricopeptide (PPR) repeat-containing protein;(source:Araport11)
TAIR Curator Summary  PPR protein with 5'exonuclease activity that is involved in chloroplast rRNA processing.
TAIR Short Description  pentatricopeptide (PPR) repeat-containing protein
TAIR Aliases  SOT1

2 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2202  
Location: Chr5:18897445-18899646 reverse strand

Gene models - AT5G46580 AT5G46580

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

2 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PP420_ARATH similarity Belongs to the PPR family. P subfamily.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast  ? ECO  
molecular function
rRNA primary transcript binding  ? ECO  
rRNA endonuclease activity  ? ECO  
deoxyribonuclease I activity  ? ECO  
biological process
ribosome biogenesis  ? ECO  
chloroplast rRNA processing  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets