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Gene : XGD1 A. thaliana

DB identifier  ? AT5G33290 Secondary Identifier  ? locus:2145924
Name  ? xylogalacturonan deficient 1 Brief Description  xylogalacturonan deficient 1
TAIR Computational Description  xylogalacturonan deficient 1;(source:Araport11)
TAIR Curator Summary  Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.
TAIR Short Description  xylogalacturonan deficient 1
TAIR Aliases  XGD1

1 Gene Rifs

1 Organism

9 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3867  
Location: Chr5:12558154-12562020

Gene models - XGD1 AT5G33290

? Gene models

Transcripts: 1  Exons: 4  Introns: 3 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
XGD1_ARATH function Involved in pectin biosynthesis. Catalyzes the transfer of xylose from UDP-xylose onto oligogalacturonides and endogenous acceptors.
XGD1_ARATH similarity Belongs to the glycosyltransferase 47 family.
XGD1_ARATH tissue specificity Highly expressed in adult leaves. Lower levels in young leaves, stems and roots.

1 Proteins

Function

Gene Ontology

cellular component
trans-Golgi network  ? ECO  
Golgi apparatus  ? ECO  
endosome  ? ECO  
Golgi membrane  ? ECO  
molecular function
UDP-xylosyltransferase activity  ? ECO  
xylogalacturonan beta-1,3-xylosyltransferase activity  ? ECO  
biological process
protein glycosylation  ? ECO  
pectin biosynthetic process  ? ECO  
xylogalacturonan metabolic process  ? ECO  
cell wall organization  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets