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Gene : BBM A. thaliana

DB identifier  ? AT5G17430 Secondary Identifier  ? locus:2178915
Name  ? BABY BOOM Brief Description  Integrase-type DNA-binding superfamily protein
TAIR Computational Description  Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. PLT4 acts after PLT3,5 and 7 during lateral roof formation.
TAIR Short Description  Integrase-type DNA-binding superfamily protein
TAIR Aliases  BBM, PLT4

1 Gene Rifs

1 Organism

27 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3356  
Location: Chr5:5742393-5745748 reverse strand

Gene models - BBM AT5G17430

? Gene models

Transcripts: 2  Exons: 17  Introns: 15 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
BBM_ARATH developmental stage Expressed in embryo during embryogenesis, first throughoutthe embryo, but later basally localized at the heart stage (PubMed:12172019, PubMed:25564655). Also present in free nuclear endosperm, but disappears once endosperm cellularization begins (PubMed:12172019). Observed in the stem cell niche and the provascular tissue of mature roots (PubMed:25564655).
BBM_ARATH function Transcription factor that, in opposition to HDG1, promotes cell proliferation and morphogenesis via transcriptional activation of meristem and cell proliferation genes, but prevents differentiation, especially during embryogenesis (PubMed:12172019, PubMed:25564655). Binds to the promoter and triggers the expression of epidermally expressed genes such as GSO1, GSO2, ACR4 and WER, and of HD-ZIP homeobox genes including PDF2, HDG1, HDG5, HDG7, HDG8, HDG11, ANL2, PDF2 and ATML1 (PubMed:25564655).
BBM_ARATH similarity Belongs to the AP2/ERF transcription factor family. AP2 subfamily.
BBM_ARATH tissue specificity Mostly expressed in developing seeds. Also expressed in roots, seedlings, and siliques, and, at low levels, in leaves.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
DNA-binding transcription factor activity  ? ECO  
DNA binding  ? ECO  
biological process
cell population proliferation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets