External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13740:CDS:1 | 148 | Chr5: 4432689-4432836 | Arabidopsis thaliana |
AT5G13740:CDS:2 | 41 | Chr5: 4433089-4433129 | Arabidopsis thaliana |
AT5G13740:CDS:3 | 61 | Chr5: 4433213-4433273 | Arabidopsis thaliana |
AT5G13740:CDS:4 | 103 | Chr5: 4433374-4433476 | Arabidopsis thaliana |
AT5G13740:CDS:5 | 103 | Chr5: 4433551-4433653 | Arabidopsis thaliana |
AT5G13740:CDS:6 | 54 | Chr5: 4433760-4433813 | Arabidopsis thaliana |
AT5G13740:CDS:7 | 63 | Chr5: 4433894-4433956 | Arabidopsis thaliana |
AT5G13740:CDS:8 | 50 | Chr5: 4434146-4434195 | Arabidopsis thaliana |
AT5G13740:CDS:9 | 76 | Chr5: 4434283-4434358 | Arabidopsis thaliana |
AT5G13740:CDS:10 | 210 | Chr5: 4434472-4434681 | Arabidopsis thaliana |
AT5G13740:CDS:11 | 88 | Chr5: 4435226-4435313 | Arabidopsis thaliana |
AT5G13740:CDS:12 | 86 | Chr5: 4435537-4435622 | Arabidopsis thaliana |
AT5G13740:CDS:13 | 108 | Chr5: 4435719-4435826 | Arabidopsis thaliana |
AT5G13740:CDS:14 | 45 | Chr5: 4435971-4436015 | Arabidopsis thaliana |
AT5G13740:CDS:16 | 93 | Chr5: 4436098-4436190 | Arabidopsis thaliana |
AT5G13740:CDS:1.1 | 148 | Chr5: 4432689-4432836 | Arabidopsis thaliana |
AT5G13740:CDS:2.1 | 41 | Chr5: 4433089-4433129 | Arabidopsis thaliana |
AT5G13740:CDS:3.1 | 61 | Chr5: 4433213-4433273 | Arabidopsis thaliana |
AT5G13740:CDS:4.1 | 103 | Chr5: 4433374-4433476 | Arabidopsis thaliana |
AT5G13740:CDS:5.1 | 103 | Chr5: 4433551-4433653 | Arabidopsis thaliana |
AT5G13740:CDS:6.1 | 54 | Chr5: 4433760-4433813 | Arabidopsis thaliana |
AT5G13740:CDS:7.1 | 63 | Chr5: 4433894-4433956 | Arabidopsis thaliana |
AT5G13740:CDS:8.1 | 50 | Chr5: 4434146-4434195 | Arabidopsis thaliana |
AT5G13740:CDS:9.1 | 76 | Chr5: 4434283-4434358 | Arabidopsis thaliana |
AT5G13740:CDS:10.1 | 210 | Chr5: 4434472-4434681 | Arabidopsis thaliana |
AT5G13740:CDS:11.1 | 88 | Chr5: 4435226-4435313 | Arabidopsis thaliana |
AT5G13740:CDS:12.1 | 86 | Chr5: 4435537-4435622 | Arabidopsis thaliana |
AT5G13740:CDS:13.1 | 108 | Chr5: 4435719-4435826 | Arabidopsis thaliana |
AT5G13740:CDS:14.1 | 45 | Chr5: 4435971-4436015 | Arabidopsis thaliana |
AT5G13740:CDS:15 | 89 | Chr5: 4436098-4436186 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13740:exon:1 | 241 | Chr5: 4432297-4432537 | Arabidopsis thaliana |
AT5G13740:exon:18 | 141 | Chr5: 4436098-4436238 | Arabidopsis thaliana |
AT5G13740:exon:2 | 232 | Chr5: 4432306-4432537 | Arabidopsis thaliana |
AT5G13740:exon:3 | 182 | Chr5: 4432655-4432836 | Arabidopsis thaliana |
AT5G13740:exon:4 | 41 | Chr5: 4433089-4433129 | Arabidopsis thaliana |
AT5G13740:exon:5 | 61 | Chr5: 4433213-4433273 | Arabidopsis thaliana |
AT5G13740:exon:6 | 103 | Chr5: 4433374-4433476 | Arabidopsis thaliana |
AT5G13740:exon:7 | 103 | Chr5: 4433551-4433653 | Arabidopsis thaliana |
AT5G13740:exon:8 | 54 | Chr5: 4433760-4433813 | Arabidopsis thaliana |
AT5G13740:exon:9 | 63 | Chr5: 4433894-4433956 | Arabidopsis thaliana |
AT5G13740:exon:10 | 50 | Chr5: 4434146-4434195 | Arabidopsis thaliana |
AT5G13740:exon:11 | 76 | Chr5: 4434283-4434358 | Arabidopsis thaliana |
AT5G13740:exon:12 | 210 | Chr5: 4434472-4434681 | Arabidopsis thaliana |
AT5G13740:exon:13 | 88 | Chr5: 4435226-4435313 | Arabidopsis thaliana |
AT5G13740:exon:14 | 86 | Chr5: 4435537-4435622 | Arabidopsis thaliana |
AT5G13740:exon:15 | 108 | Chr5: 4435719-4435826 | Arabidopsis thaliana |
AT5G13740:exon:16 | 45 | Chr5: 4435971-4436015 | Arabidopsis thaliana |
AT5G13740:exon:17 | 89 | Chr5: 4436098-4436186 | Arabidopsis thaliana |
AT5G13740:exon:19 | 44 | Chr5: 4436270-4436313 | Arabidopsis thaliana |
AT5G13740:exon:20 | 757 | Chr5: 4436392-4437148 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13740:five_prime_UTR:1 | 241 | Chr5: 4432297-4432537 | Arabidopsis thaliana |
AT5G13740:five_prime_UTR:2 | 232 | Chr5: 4432306-4432537 | Arabidopsis thaliana |
AT5G13740:five_prime_UTR:3 | 34 | Chr5: 4432655-4432688 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G13740.2 | 1652 | Chr5: 4432297-4436238 |
AT5G13740.1 | 2392 | Chr5: 4432306-4437148 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G13740:three_prime_UTR:1 | 48 | Chr5: 4436191-4436238 | Arabidopsis thaliana |
AT5G13740:three_prime_UTR:2 | 665 | Chr5: 4436484-4437148 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ZIF1_ARATH | function | Major facilitator superfamily (MFS) transporter involved in zinc tolerance by participating in vacuolar sequestration of zinc. |
ZIF1_ARATH | similarity | Belongs to the major facilitator superfamily. |
ZIF1_ARATH | tissue specificity | Strongly expressed in developing leaves, differentiating zones of root tips and sepals of developing flowers. Restricted to vascular tissues in older leaves, mature roots, flowers, anthers and filaments. Not expressed in developing anthers. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole membrane | ECO |
molecular function | |
transmembrane transporter activity | ECO |
biological process | |
response to nematode | ECO |
response to zinc ion | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...