help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : AT5G07410 A. thaliana

DB identifier  ? AT5G07410 Secondary Identifier  ? locus:2183334
Brief Description  Pectin lyase-like superfamily protein
TAIR Computational Description  Pectin lyase-like superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a pectin methylesterase implicated in the remodeling of pectins in pollen. Its expression is restricted to the male gametophyte (dry pollen, imbibed pollen and pollen tube). Mutants do not display any phenotype in the vegetative tissues. Pollen germination of KO mutant is strongly delayed in vivo and in vitro. Extra calcium restores the wild type phenotype in vitro.
TAIR Short Description  Pectin lyase-like superfamily protein
TAIR Aliases  AtPME48, PME48

1 Gene Rifs

1 Organism

8 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1808  
Location: Chr5:2345758-2347565

Gene models - AT5G07410 AT5G07410

? Gene models

Transcripts: 1  Exons: 5  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PME48_ARATH function Acts in the modification of cell walls via demethylesterification of cell wall pectin.
PME48_ARATH pathway Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D-gluconate from pectin: step 1/5.
PME48_ARATH similarity Belongs to the pectinesterase family.
PME48_ARATH tissue specificity Expressed in mature pollen grains in the anthers and on the stigma. Found in pollen tubes within the style.

1 Proteins

Function

Gene Ontology

cellular component
pollen tube  ? ECO  
extracellular region  ? ECO  
molecular function
pectinesterase activity  ? ECO  
biological process
pectin catabolic process  ? ECO  
pollen germination  ? ECO  
cell wall modification  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets