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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G05930:CDS:11 | 85 | Chr5: 1781067-1781151 | Arabidopsis thaliana |
AT5G05930:CDS:8 | 89 | Chr5: 1781402-1781490 | Arabidopsis thaliana |
AT5G05930:CDS:7 | 75 | Chr5: 1781758-1781832 | Arabidopsis thaliana |
AT5G05930:CDS:6 | 112 | Chr5: 1782018-1782129 | Arabidopsis thaliana |
AT5G05930:CDS:3 | 125 | Chr5: 1782269-1782393 | Arabidopsis thaliana |
AT5G05930:CDS:1 | 174 | Chr5: 1782486-1782659 | Arabidopsis thaliana |
AT5G05930:CDS:14 | 39 | Chr5: 1780270-1780308 | Arabidopsis thaliana |
AT5G05930:CDS:13 | 76 | Chr5: 1780395-1780470 | Arabidopsis thaliana |
AT5G05930:CDS:12 | 73 | Chr5: 1780772-1780844 | Arabidopsis thaliana |
AT5G05930:CDS:10 | 62 | Chr5: 1781090-1781151 | Arabidopsis thaliana |
AT5G05930:CDS:8.1 | 89 | Chr5: 1781402-1781490 | Arabidopsis thaliana |
AT5G05930:CDS:7.1 | 75 | Chr5: 1781758-1781832 | Arabidopsis thaliana |
AT5G05930:CDS:6.1 | 112 | Chr5: 1782018-1782129 | Arabidopsis thaliana |
AT5G05930:CDS:3.1 | 125 | Chr5: 1782269-1782393 | Arabidopsis thaliana |
AT5G05930:CDS:1.1 | 174 | Chr5: 1782486-1782659 | Arabidopsis thaliana |
AT5G05930:CDS:14.1 | 39 | Chr5: 1780270-1780308 | Arabidopsis thaliana |
AT5G05930:CDS:13.1 | 76 | Chr5: 1780395-1780470 | Arabidopsis thaliana |
AT5G05930:CDS:12.1 | 73 | Chr5: 1780772-1780844 | Arabidopsis thaliana |
AT5G05930:CDS:10.1 | 62 | Chr5: 1781090-1781151 | Arabidopsis thaliana |
AT5G05930:CDS:8.2 | 89 | Chr5: 1781402-1781490 | Arabidopsis thaliana |
AT5G05930:CDS:7.2 | 75 | Chr5: 1781758-1781832 | Arabidopsis thaliana |
AT5G05930:CDS:6.2 | 112 | Chr5: 1782018-1782129 | Arabidopsis thaliana |
AT5G05930:CDS:4 | 71 | Chr5: 1782269-1782339 | Arabidopsis thaliana |
AT5G05930:CDS:14.2 | 39 | Chr5: 1780270-1780308 | Arabidopsis thaliana |
AT5G05930:CDS:13.2 | 76 | Chr5: 1780395-1780470 | Arabidopsis thaliana |
AT5G05930:CDS:12.2 | 73 | Chr5: 1780772-1780844 | Arabidopsis thaliana |
AT5G05930:CDS:10.2 | 62 | Chr5: 1781090-1781151 | Arabidopsis thaliana |
AT5G05930:CDS:8.3 | 89 | Chr5: 1781402-1781490 | Arabidopsis thaliana |
AT5G05930:CDS:7.3 | 75 | Chr5: 1781758-1781832 | Arabidopsis thaliana |
AT5G05930:CDS:6.3 | 112 | Chr5: 1782018-1782129 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G05930:exon:16 | 380 | Chr5: 1780772-1781151 | Arabidopsis thaliana |
AT5G05930:exon:21 | 439 | Chr5: 1779870-1780308 | Arabidopsis thaliana |
AT5G05930:exon:2 | 313 | Chr5: 1783139-1783451 | Arabidopsis thaliana |
AT5G05930:exon:20 | 336 | Chr5: 1779973-1780308 | Arabidopsis thaliana |
AT5G05930:exon:1 | 327 | Chr5: 1783139-1783465 | Arabidopsis thaliana |
AT5G05930:exon:8 | 202 | Chr5: 1782269-1782470 | Arabidopsis thaliana |
AT5G05930:exon:10 | 60 | Chr5: 1782269-1782328 | Arabidopsis thaliana |
AT5G05930:exon:5 | 532 | Chr5: 1782486-1783017 | Arabidopsis thaliana |
AT5G05930:exon:19 | 335 | Chr5: 1779974-1780308 | Arabidopsis thaliana |
AT5G05930:exon:18 | 76 | Chr5: 1780395-1780470 | Arabidopsis thaliana |
AT5G05930:exon:17 | 73 | Chr5: 1780772-1780844 | Arabidopsis thaliana |
AT5G05930:exon:15 | 62 | Chr5: 1781090-1781151 | Arabidopsis thaliana |
AT5G05930:exon:13 | 89 | Chr5: 1781402-1781490 | Arabidopsis thaliana |
AT5G05930:exon:7 | 474 | Chr5: 1782269-1782742 | Arabidopsis thaliana |
AT5G05930:exon:4 | 509 | Chr5: 1782904-1783412 | Arabidopsis thaliana |
AT5G05930:exon:14 | 337 | Chr5: 1781154-1781490 | Arabidopsis thaliana |
AT5G05930:exon:12 | 75 | Chr5: 1781758-1781832 | Arabidopsis thaliana |
AT5G05930:exon:11 | 112 | Chr5: 1782018-1782129 | Arabidopsis thaliana |
AT5G05930:exon:9 | 125 | Chr5: 1782269-1782393 | Arabidopsis thaliana |
AT5G05930:exon:6 | 257 | Chr5: 1782486-1782742 | Arabidopsis thaliana |
AT5G05930:exon:3 | 274 | Chr5: 1783139-1783412 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G05930:five_prime_UTR:2 | 313 | Chr5: 1783139-1783451 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:1 | 327 | Chr5: 1783139-1783465 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:8 | 131 | Chr5: 1782340-1782470 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:6 | 485 | Chr5: 1782533-1783017 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:7 | 403 | Chr5: 1782340-1782742 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:4 | 509 | Chr5: 1782904-1783412 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:5 | 83 | Chr5: 1782660-1782742 | Arabidopsis thaliana |
AT5G05930:five_prime_UTR:3 | 274 | Chr5: 1783139-1783412 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G05930.3 | 1866 | Chr5: 1779870-1783451 |
AT5G05930.1 | 1621 | Chr5: 1779870-1783451 |
AT5G05930.4 | 1624 | Chr5: 1779973-1783465 |
AT5G05930.6 | 1024 | Chr5: 1779974-1782470 |
AT5G05930.2 | 1688 | Chr5: 1779974-1783412 |
AT5G05930.5 | 1805 | Chr5: 1779974-1783412 |
AT5G05930.7 | 1180 | Chr5: 1781154-1783412 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G05930:three_prime_UTR:6 | 439 | Chr5: 1779870-1780308 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:3 | 76 | Chr5: 1780395-1780470 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:2 | 295 | Chr5: 1780772-1781066 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:7 | 400 | Chr5: 1779870-1780269 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:5 | 297 | Chr5: 1779973-1780269 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:4 | 296 | Chr5: 1779974-1780269 | Arabidopsis thaliana |
AT5G05930:three_prime_UTR:1 | 205 | Chr5: 1781154-1781358 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
GCC1_ARATH | function | Magnesium-dependent guanylyl cyclase that catalyzes the formation of guanosine 3',5'-cyclic monophosphate (cGMP) from guanosine 5'-triphosphate (GTP) (PubMed:12482758). Can also use ATP as substrate with a low activity (PubMed:12482758). |
GCC1_ARATH | pathway | Nucleotide metabolism. |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
guanylate cyclase activity | ECO |
biological process | |
cGMP biosynthetic process | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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