External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense RNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G07975.1 | 194 | Chr4: 13951108-13951301 |
AT4G07975.2 | 197 | Chr4: 13956692-13956888 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28080:CDS:23 | 1962 | Chr4: 13948993-13950954 | Arabidopsis thaliana |
AT4G28080:CDS:22 | 79 | Chr4: 13951050-13951128 | Arabidopsis thaliana |
AT4G28080:CDS:21 | 113 | Chr4: 13951809-13951921 | Arabidopsis thaliana |
AT4G28080:CDS:20 | 132 | Chr4: 13951993-13952124 | Arabidopsis thaliana |
AT4G28080:CDS:19 | 184 | Chr4: 13952409-13952592 | Arabidopsis thaliana |
AT4G28080:CDS:18 | 134 | Chr4: 13952675-13952808 | Arabidopsis thaliana |
AT4G28080:CDS:17 | 105 | Chr4: 13952908-13953012 | Arabidopsis thaliana |
AT4G28080:CDS:16 | 102 | Chr4: 13953409-13953510 | Arabidopsis thaliana |
AT4G28080:CDS:15 | 93 | Chr4: 13953601-13953693 | Arabidopsis thaliana |
AT4G28080:CDS:14 | 309 | Chr4: 13953777-13954085 | Arabidopsis thaliana |
AT4G28080:CDS:13 | 102 | Chr4: 13954213-13954314 | Arabidopsis thaliana |
AT4G28080:CDS:12 | 63 | Chr4: 13954393-13954455 | Arabidopsis thaliana |
AT4G28080:CDS:11 | 508 | Chr4: 13954600-13955107 | Arabidopsis thaliana |
AT4G28080:CDS:10 | 158 | Chr4: 13955326-13955483 | Arabidopsis thaliana |
AT4G28080:CDS:9 | 525 | Chr4: 13955563-13956087 | Arabidopsis thaliana |
AT4G28080:CDS:8 | 42 | Chr4: 13956169-13956210 | Arabidopsis thaliana |
AT4G28080:CDS:7 | 132 | Chr4: 13956294-13956425 | Arabidopsis thaliana |
AT4G28080:CDS:6 | 65 | Chr4: 13956499-13956563 | Arabidopsis thaliana |
AT4G28080:CDS:5 | 354 | Chr4: 13956640-13956993 | Arabidopsis thaliana |
AT4G28080:CDS:4 | 73 | Chr4: 13957086-13957158 | Arabidopsis thaliana |
AT4G28080:CDS:3 | 93 | Chr4: 13957333-13957425 | Arabidopsis thaliana |
AT4G28080:CDS:2 | 62 | Chr4: 13957561-13957622 | Arabidopsis thaliana |
AT4G28080:CDS:1 | 70 | Chr4: 13957771-13957840 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:exon:14 | 241 | Chr4: 13948387-13948627 | Arabidopsis thaliana |
AT4G28080:exon:23 | 2352 | Chr4: 13948603-13950954 | Arabidopsis thaliana |
AT4G28080:exon:22 | 79 | Chr4: 13951050-13951128 | Arabidopsis thaliana |
AT4G28080:exon:21 | 113 | Chr4: 13951809-13951921 | Arabidopsis thaliana |
AT4G28080:exon:20 | 132 | Chr4: 13951993-13952124 | Arabidopsis thaliana |
AT4G28080:exon:19 | 184 | Chr4: 13952409-13952592 | Arabidopsis thaliana |
AT4G28080:exon:18 | 134 | Chr4: 13952675-13952808 | Arabidopsis thaliana |
AT4G28080:exon:17 | 105 | Chr4: 13952908-13953012 | Arabidopsis thaliana |
AT4G28080:exon:16 | 102 | Chr4: 13953409-13953510 | Arabidopsis thaliana |
AT4G28080:exon:15 | 93 | Chr4: 13953601-13953693 | Arabidopsis thaliana |
AT4G28080:exon:14 | 309 | Chr4: 13953777-13954085 | Arabidopsis thaliana |
AT4G28080:exon:13 | 102 | Chr4: 13954213-13954314 | Arabidopsis thaliana |
AT4G28080:exon:12 | 63 | Chr4: 13954393-13954455 | Arabidopsis thaliana |
AT4G28080:exon:11 | 508 | Chr4: 13954600-13955107 | Arabidopsis thaliana |
AT4G28080:exon:10 | 158 | Chr4: 13955326-13955483 | Arabidopsis thaliana |
AT4G28080:exon:9 | 525 | Chr4: 13955563-13956087 | Arabidopsis thaliana |
AT4G28080:exon:8 | 42 | Chr4: 13956169-13956210 | Arabidopsis thaliana |
AT4G28080:exon:7 | 132 | Chr4: 13956294-13956425 | Arabidopsis thaliana |
AT4G28080:exon:6 | 65 | Chr4: 13956499-13956563 | Arabidopsis thaliana |
AT4G28080:exon:5 | 354 | Chr4: 13956640-13956993 | Arabidopsis thaliana |
AT4G28080:exon:4 | 73 | Chr4: 13957086-13957158 | Arabidopsis thaliana |
AT4G28080:exon:3 | 93 | Chr4: 13957333-13957425 | Arabidopsis thaliana |
AT4G28080:exon:2 | 62 | Chr4: 13957561-13957622 | Arabidopsis thaliana |
AT4G28080:exon:1 | 337 | Chr4: 13957771-13958107 | Arabidopsis thaliana |
AT4G07975:exon:1 | 194 | Chr4: 13951108-13951301 | Arabidopsis thaliana |
AT4G07975:exon:2 | 197 | Chr4: 13956692-13956888 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28080:five_prime_UTR:1 | 267 | Chr4: 13957841-13958107 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G28070 | locus:2133007 | AT4G28070 | 2736 | Chr4: 13945892-13948627 | A. thaliana | AFG1-like ATPase family protein;(source:Araport11) | NULL | AFG1-like ATPase family protein | ||
AT4G07975 | AT4G07975 | 5781 | Chr4: 13951108-13956888 | A. thaliana | Natural antisense transcript overlaps with AT4G28080;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G28070.1 | 1677 | Chr4: 13945892-13948627 |
AT4G28070.2 | 1678 | Chr4: 13945918-13948627 |
AT4G28080.1 | 6117 | Chr4: 13948603-13958107 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G28070:three_prime_UTR:1 | 165 | Chr4: 13948463-13948627 | Arabidopsis thaliana |
AT4G28080:three_prime_UTR:1 | 390 | Chr4: 13948603-13948992 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
REC2_ARATH | function | Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability (PubMed:21185286). May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues (PubMed:21185286). Together with REC2, REC3 and FMT/CLU, contributes to the establishment of the cellular volume devoted to the chloroplast compartment (PubMed:26862170). |
REC2_ARATH | tissue specificity | Expressed in the non-epidermal tissues of the true leaves (PubMed:21185286). Not detected in the vegetative shoot meristem and leaf primordia (PubMed:21185286). |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
plasma membrane | ECO |
nucleus | ECO |
molecular function | |
mRNA binding | ECO |
biological process | |
chloroplast localization | ECO |
Interactions
Interaction Network
Error loading results. Please clear your cache and try again.
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...