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Gene : AT4G26630 A. thaliana

DB identifier  ? AT4G26630 Secondary Identifier  ? locus:2133847
Brief Description  DEK domain-containing chromatin associated protein
TAIR Computational Description  DEK domain-containing chromatin associated protein;(source:Araport11)
TAIR Curator Summary  Encodes a chromatin-associated protein that specifically binds histones H3 and H4 and contributes to modulation of Arabidopsis chromatin structure and function.
TAIR Short Description  DEK domain-containing chromatin associated protein
TAIR Aliases  DEK3

2 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5366  
Location: Chr4:13430405-13435770 reverse strand

Gene models - AT4G26630 AT4G26630

? Gene models

Transcripts: 2  Exons: 24  Introns: 22 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
DEKP3_ARATH function Chromatin-associated protein which contributes to the modulation of chromatin structure (such as super-helical structure of DNA) and function (PubMed:25387881). Binds to chromatin of protein-coding genes throughout the genome to regulate nucleosome occupancy and chromatin accessibility, and to modulate the expression of target genes (PubMed:25387881). Negative regulator of stress tolerance (e.g. high salt) (PubMed:25387881).
DEKP3_ARATH subcellular location Associates with chromatin (PubMed:25387881). Enriched in regions where chromatin is decondensed or sparse in the interphase nuclei (By similarity).
DEKP3_ARATH tissue specificity Highly expressed in young seedlings.

1 Proteins

Function

Gene Ontology

cellular component
nucleolus  ? ECO  
cytosol  ? ECO  
nucleus  ? ECO  
molecular function
chromatin binding  ? ECO  
histone binding  ? ECO  
DNA binding  ? ECO  
biological process
negative regulation of DNA-templated transcription  ? ECO  
regulation of DNA-templated transcription  ? ECO  
response to salt stress  ? ECO  
chromatin remodeling  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets