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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 42, Exons: 17, Five Prime UTRs: 9, mRNAs: 8, Three Prime UTRs: 5, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G13040:CDS:3 | 43 | Chr4: 7614100-7614142 | Arabidopsis thaliana |
AT4G13040:CDS:4 | 131 | Chr4: 7614220-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:8 | 109 | Chr4: 7614560-7614668 | Arabidopsis thaliana |
AT4G13040:CDS:9 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:10 | 122 | Chr4: 7615021-7615142 | Arabidopsis thaliana |
AT4G13040:CDS:12 | 95 | Chr4: 7615216-7615310 | Arabidopsis thaliana |
AT4G13040:CDS:5 | 84 | Chr4: 7614267-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:8.1 | 109 | Chr4: 7614560-7614668 | Arabidopsis thaliana |
AT4G13040:CDS:9.1 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:10.1 | 122 | Chr4: 7615021-7615142 | Arabidopsis thaliana |
AT4G13040:CDS:12.1 | 95 | Chr4: 7615216-7615310 | Arabidopsis thaliana |
AT4G13040:CDS:6 | 59 | Chr4: 7614292-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:7 | 56 | Chr4: 7614560-7614615 | Arabidopsis thaliana |
AT4G13040:CDS:9.2 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:11 | 208 | Chr4: 7615021-7615228 | Arabidopsis thaliana |
AT4G13040:CDS:6.1 | 59 | Chr4: 7614292-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:7.1 | 56 | Chr4: 7614560-7614615 | Arabidopsis thaliana |
AT4G13040:CDS:9.3 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:10.2 | 122 | Chr4: 7615021-7615142 | Arabidopsis thaliana |
AT4G13040:CDS:12.2 | 95 | Chr4: 7615216-7615310 | Arabidopsis thaliana |
AT4G13040:CDS:6.2 | 59 | Chr4: 7614292-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:7.2 | 56 | Chr4: 7614560-7614615 | Arabidopsis thaliana |
AT4G13040:CDS:9.4 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:10.3 | 122 | Chr4: 7615021-7615142 | Arabidopsis thaliana |
AT4G13040:CDS:12.3 | 95 | Chr4: 7615216-7615310 | Arabidopsis thaliana |
AT4G13040:CDS:3.1 | 43 | Chr4: 7614100-7614142 | Arabidopsis thaliana |
AT4G13040:CDS:4.1 | 131 | Chr4: 7614220-7614350 | Arabidopsis thaliana |
AT4G13040:CDS:8.2 | 109 | Chr4: 7614560-7614668 | Arabidopsis thaliana |
AT4G13040:CDS:9.5 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:CDS:11.1 | 208 | Chr4: 7615021-7615228 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G13040:exon:1 | 218 | Chr4: 7613213-7613430 | Arabidopsis thaliana |
AT4G13040:exon:16 | 663 | Chr4: 7615216-7615878 | Arabidopsis thaliana |
AT4G13040:exon:14 | 935 | Chr4: 7615021-7615955 | Arabidopsis thaliana |
AT4G13040:exon:2 | 192 | Chr4: 7613239-7613430 | Arabidopsis thaliana |
AT4G13040:exon:9 | 56 | Chr4: 7614560-7614615 | Arabidopsis thaliana |
AT4G13040:exon:3 | 162 | Chr4: 7613269-7613430 | Arabidopsis thaliana |
AT4G13040:exon:13 | 729 | Chr4: 7615021-7615749 | Arabidopsis thaliana |
AT4G13040:exon:4 | 161 | Chr4: 7613270-7613430 | Arabidopsis thaliana |
AT4G13040:exon:7 | 279 | Chr4: 7614072-7614350 | Arabidopsis thaliana |
AT4G13040:exon:15 | 512 | Chr4: 7615216-7615727 | Arabidopsis thaliana |
AT4G13040:exon:5 | 32 | Chr4: 7613720-7613751 | Arabidopsis thaliana |
AT4G13040:exon:6 | 71 | Chr4: 7614072-7614142 | Arabidopsis thaliana |
AT4G13040:exon:8 | 131 | Chr4: 7614220-7614350 | Arabidopsis thaliana |
AT4G13040:exon:10 | 109 | Chr4: 7614560-7614668 | Arabidopsis thaliana |
AT4G13040:exon:11 | 181 | Chr4: 7614768-7614948 | Arabidopsis thaliana |
AT4G13040:exon:12 | 122 | Chr4: 7615021-7615142 | Arabidopsis thaliana |
AT4G13040:exon:17 | 740 | Chr4: 7615216-7615955 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G13040:five_prime_UTR:1 | 218 | Chr4: 7613213-7613430 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:8 | 47 | Chr4: 7614220-7614266 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:6 | 71 | Chr4: 7614072-7614142 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:2 | 192 | Chr4: 7613239-7613430 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:9 | 72 | Chr4: 7614220-7614291 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:3 | 162 | Chr4: 7613269-7613430 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:5 | 28 | Chr4: 7614072-7614099 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:4 | 161 | Chr4: 7613270-7613430 | Arabidopsis thaliana |
AT4G13040:five_prime_UTR:7 | 195 | Chr4: 7614072-7614266 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G13040.1 | 1495 | Chr4: 7613213-7615878 |
AT4G13040.4 | 1424 | Chr4: 7613213-7615878 |
AT4G13040.5 | 1566 | Chr4: 7613239-7615955 |
AT4G13040.2 | 1493 | Chr4: 7613239-7615955 |
AT4G13040.6 | 1422 | Chr4: 7613239-7615955 |
AT4G13040.7 | 1383 | Chr4: 7613269-7615749 |
AT4G13040.8 | 1364 | Chr4: 7613270-7615727 |
AT4G13040.3 | 1386 | Chr4: 7613720-7615955 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G13040:three_prime_UTR:4 | 568 | Chr4: 7615311-7615878 | Arabidopsis thaliana |
AT4G13040:three_prime_UTR:2 | 727 | Chr4: 7615229-7615955 | Arabidopsis thaliana |
AT4G13040:three_prime_UTR:1 | 521 | Chr4: 7615229-7615749 | Arabidopsis thaliana |
AT4G13040:three_prime_UTR:3 | 417 | Chr4: 7615311-7615727 | Arabidopsis thaliana |
AT4G13040:three_prime_UTR:5 | 645 | Chr4: 7615311-7615955 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE33295 | 891 | Chr4: 7612343-7613233 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4TE33295:transposon_fragment:1 | 891 | Chr4: 7612343-7613233 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ERFL1_ARATH ERFL1_ARATH-2 | function | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). |
ERFL1_ARATH ERFL1_ARATH-2 | similarity | Belongs to the AP2/ERF transcription factor family. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
DNA-binding transcription factor activity | ECO |
DNA binding | ECO |
biological process | |
ethylene-activated signaling pathway | ECO |
Interactions
Interaction Network
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Expression
Co-expression
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Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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