Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60500:CDS:1 | 137 | Chr3: 22354245-22354381 | Arabidopsis thaliana |
AT3G60500:CDS:2 | 210 | Chr3: 22354606-22354815 | Arabidopsis thaliana |
AT3G60500:CDS:3 | 96 | Chr3: 22354913-22355008 | Arabidopsis thaliana |
AT3G60500:CDS:4 | 115 | Chr3: 22355099-22355213 | Arabidopsis thaliana |
AT3G60500:CDS:5 | 81 | Chr3: 22355318-22355398 | Arabidopsis thaliana |
AT3G60500:CDS:6 | 189 | Chr3: 22355489-22355677 | Arabidopsis thaliana |
AT3G60500:CDS:7 | 239 | Chr3: 22355768-22356006 | Arabidopsis thaliana |
AT3G60500:CDS:9 | 59 | Chr3: 22356106-22356164 | Arabidopsis thaliana |
AT3G60500:CDS:10 | 191 | Chr3: 22356250-22356440 | Arabidopsis thaliana |
AT3G60500:CDS:1.1 | 137 | Chr3: 22354245-22354381 | Arabidopsis thaliana |
AT3G60500:CDS:2.1 | 210 | Chr3: 22354606-22354815 | Arabidopsis thaliana |
AT3G60500:CDS:3.1 | 96 | Chr3: 22354913-22355008 | Arabidopsis thaliana |
AT3G60500:CDS:4.1 | 115 | Chr3: 22355099-22355213 | Arabidopsis thaliana |
AT3G60500:CDS:5.1 | 81 | Chr3: 22355318-22355398 | Arabidopsis thaliana |
AT3G60500:CDS:6.1 | 189 | Chr3: 22355489-22355677 | Arabidopsis thaliana |
AT3G60500:CDS:8 | 288 | Chr3: 22355768-22356055 | Arabidopsis thaliana |
AT3G60500:CDS:1.2 | 137 | Chr3: 22354245-22354381 | Arabidopsis thaliana |
AT3G60500:CDS:2.2 | 210 | Chr3: 22354606-22354815 | Arabidopsis thaliana |
AT3G60500:CDS:3.2 | 96 | Chr3: 22354913-22355008 | Arabidopsis thaliana |
AT3G60500:CDS:4.2 | 115 | Chr3: 22355099-22355213 | Arabidopsis thaliana |
AT3G60500:CDS:5.2 | 81 | Chr3: 22355318-22355398 | Arabidopsis thaliana |
AT3G60500:CDS:6.2 | 189 | Chr3: 22355489-22355677 | Arabidopsis thaliana |
AT3G60500:CDS:7.1 | 239 | Chr3: 22355768-22356006 | Arabidopsis thaliana |
AT3G60500:CDS:9.1 | 59 | Chr3: 22356106-22356164 | Arabidopsis thaliana |
AT3G60500:CDS:10.1 | 191 | Chr3: 22356250-22356440 | Arabidopsis thaliana |
AT3G60500:CDS:1.3 | 137 | Chr3: 22354245-22354381 | Arabidopsis thaliana |
AT3G60500:CDS:2.3 | 210 | Chr3: 22354606-22354815 | Arabidopsis thaliana |
AT3G60500:CDS:3.3 | 96 | Chr3: 22354913-22355008 | Arabidopsis thaliana |
AT3G60500:CDS:4.3 | 115 | Chr3: 22355099-22355213 | Arabidopsis thaliana |
AT3G60500:CDS:5.3 | 81 | Chr3: 22355318-22355398 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60500:exon:1 | 272 | Chr3: 22353845-22354116 | Arabidopsis thaliana |
AT3G60500:exon:5 | 157 | Chr3: 22354225-22354381 | Arabidopsis thaliana |
AT3G60500:exon:18 | 499 | Chr3: 22356250-22356748 | Arabidopsis thaliana |
AT3G60500:exon:2 | 269 | Chr3: 22353848-22354116 | Arabidopsis thaliana |
AT3G60500:exon:14 | 397 | Chr3: 22355768-22356164 | Arabidopsis thaliana |
AT3G60500:exon:17 | 413 | Chr3: 22356250-22356662 | Arabidopsis thaliana |
AT3G60500:exon:3 | 234 | Chr3: 22353883-22354116 | Arabidopsis thaliana |
AT3G60500:exon:6 | 149 | Chr3: 22354233-22354381 | Arabidopsis thaliana |
AT3G60500:exon:16 | 376 | Chr3: 22356250-22356625 | Arabidopsis thaliana |
AT3G60500:exon:4 | 217 | Chr3: 22353900-22354116 | Arabidopsis thaliana |
AT3G60500:exon:7 | 140 | Chr3: 22354242-22354381 | Arabidopsis thaliana |
AT3G60500:exon:8 | 210 | Chr3: 22354606-22354815 | Arabidopsis thaliana |
AT3G60500:exon:9 | 96 | Chr3: 22354913-22355008 | Arabidopsis thaliana |
AT3G60500:exon:10 | 115 | Chr3: 22355099-22355213 | Arabidopsis thaliana |
AT3G60500:exon:11 | 81 | Chr3: 22355318-22355398 | Arabidopsis thaliana |
AT3G60500:exon:12 | 189 | Chr3: 22355489-22355677 | Arabidopsis thaliana |
AT3G60500:exon:13 | 239 | Chr3: 22355768-22356006 | Arabidopsis thaliana |
AT3G60500:exon:15 | 59 | Chr3: 22356106-22356164 | Arabidopsis thaliana |
AT3G60500:exon:19 | 600 | Chr3: 22356250-22356849 | Arabidopsis thaliana |
AT3G60510:exon:20 | 504 | Chr3: 22356754-22357257 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60500:five_prime_UTR:1 | 272 | Chr3: 22353845-22354116 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:5 | 20 | Chr3: 22354225-22354244 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:2 | 269 | Chr3: 22353848-22354116 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:3 | 234 | Chr3: 22353883-22354116 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:6 | 12 | Chr3: 22354233-22354244 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:4 | 217 | Chr3: 22353900-22354116 | Arabidopsis thaliana |
AT3G60500:five_prime_UTR:7 | 3 | Chr3: 22354242-22354244 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G60510 | locus:2103331 | AT3G60510 | 3523 | Chr3: 22356754-22360276 | A. thaliana | ATP-dependent caseinolytic (Clp) protease/crotonase family protein;(source:Araport11) | NULL | ATP-dependent caseinolytic (Clp) protease/crotonase family protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G60500.2 | 1917 | Chr3: 22353845-22356748 |
AT3G60500.4 | 1910 | Chr3: 22353848-22356662 |
AT3G60500.3 | 1748 | Chr3: 22353883-22356625 |
AT3G60500.1 | 1946 | Chr3: 22353900-22356849 |
AT3G60510.1 | 1807 | Chr3: 22356754-22360217 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G60500:three_prime_UTR:4 | 308 | Chr3: 22356441-22356748 | Arabidopsis thaliana |
AT3G60500:three_prime_UTR:1 | 109 | Chr3: 22356056-22356164 | Arabidopsis thaliana |
AT3G60500:three_prime_UTR:2 | 413 | Chr3: 22356250-22356662 | Arabidopsis thaliana |
AT3G60500:three_prime_UTR:3 | 185 | Chr3: 22356441-22356625 | Arabidopsis thaliana |
AT3G60500:three_prime_UTR:5 | 409 | Chr3: 22356441-22356849 | Arabidopsis thaliana |
AT3G60510:three_prime_UTR:5 | 387 | Chr3: 22356754-22357140 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CER7_ARATH | function | Probable 3'->5' exoribonuclease involved in the regulation of cuticular wax biosynthesis by controlling the expression of CER3. May act by degrading a specific mRNA species encoding a negative regulator of CER3 transcription. Can perform exosomal functions and complement the yeast rrp45 null mutant. |
A0A1I9LRV7_ARATH CER7_ARATH | similarity | Belongs to the RNase PH family. |
CER7_ARATH | subcellular location | Excluded from the nucleolus. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
nucleus | ECO |
exosome (RNase complex) | ECO |
cytoplasm | ECO |
molecular function | |
3'-5'-RNA exonuclease activity | ECO |
RNA binding | ECO |
biological process | |
RNA processing | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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