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Gene : SDN1 A. thaliana

DB identifier  ? AT3G50100 Secondary Identifier  ? locus:2083163
Name  ? small RNA degrading nuclease 1 Brief Description  small RNA degrading nuclease 1
TAIR Computational Description  small RNA degrading nuclease 1;(source:Araport11)
TAIR Curator Summary  Encodes an exonuclease that degrades single-stranded small RNAs in vitro and limits the accumulation of small RNAs in vivo. Initiates the turnover of ARGONAUTE1 (AGO1)-bound microRNAs in Arabidopsis by trimming their 3′ ends.
TAIR Short Description  small RNA degrading nuclease 1
TAIR Aliases  SDN1

3 Gene Rifs

1 Organism

6 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2381  
Location: Chr3:18578306-18580686

Gene models - SDN1 AT3G50100

? Gene models

Transcripts: 2  Exons: 23  Introns: 21 

Overlapping Features

? Genome features that overlap coordinates of this Gene

16 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SDN1_ARATH function 3'-5' exonuclease degrading single-stranded small RNAs.
SDN1_ARATH similarity Belongs to the REXO1/REXO3 family.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
miRNA binding  ? ECO  
3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing  ? ECO  
3'-5' exonuclease activity  ? ECO  
3'-5'-RNA exonuclease activity  ? ECO  
biological process
miRNA catabolic process  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets