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Gene : AT3G46610 A. thaliana

DB identifier  ? AT3G46610 Secondary Identifier  ? locus:2075165
Brief Description  Pentatricopeptide repeat (PPR-like) superfamily protein
TAIR Computational Description  Pentatricopeptide repeat (PPR-like) superfamily protein;(source:Araport11)
TAIR Curator Summary  Chloroplast-localized PPR protein required for the translation of the psbJ and psbN open reading frames. TPJ(2019) shows that LPE1 is not required for psbA translation, in contrast to previous results (PNAS 2018).
TAIR Short Description  Pentatricopeptide repeat (PPR-like) superfamily protein
TAIR Aliases  LPE1

1 Gene Rifs

1 Organism

7 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2713  
Location: Chr3:17159763-17162475 reverse strand

Gene models - AT3G46610 AT3G46610

? Gene models

Transcripts: 2  Exons: 3  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PP264_ARATH function Required for light-regulated photosystem II (PSII) biogenesis and grana thylakoids formation by binding to the 5' UTR of PSII subunit mRNAs (e.g. psbJ, psbN and psbA) in a light-dependent manner through a redox-based mechanism, and facilitating the association of HCF173 with target mRNAs, which encodes PSII reaction center proteins (e.g. J, N and D1), thus regulating its expression by modulating ribosome loading.
PP264_ARATH similarity Belongs to the PPR family. P subfamily.
PP264_ARATH subcellular location Predominantly present at thylakoid membranes.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast stroma  ? ECO  
chloroplast thylakoid membrane  ? ECO  
molecular function
translation activator activity  ? ECO  
mRNA binding  ? ECO  
ribosome binding  ? ECO  
RNA binding  ? ECO  
biological process
photosystem II assembly  ? ECO  
plastid translation  ? ECO  
translational initiation  ? ECO  
response to light stimulus  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets