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Gene : NRPB5 A. thaliana

DB identifier  ? AT3G22320 Secondary Identifier  ? locus:2087842
Brief Description  Eukaryotic rpb5 RNA polymerase subunit family protein
TAIR Computational Description  Eukaryotic rpb5 RNA polymerase subunit family protein;(source:Araport11)
TAIR Curator Summary  Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
TAIR Short Description  Eukaryotic rpb5 RNA polymerase subunit family protein
TAIR Aliases  ATRPABC24.3, NRPB5, NRPD5, RPB5A

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1547  
Location: Chr3:7890803-7892349 reverse strand

Gene models - NRPB5 AT3G22320

? Gene models

Transcripts: 1  Exons: 5  Introns: 4 

Overlapping Features

? Genome features that overlap coordinates of this Gene

6 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RPB5A_ARATH function DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. Component of RNA polymerase IV which mediates short-interfering RNAs (siRNA) accumulation and subsequent RNA-directed DNA methylation-dependent (RdDM) transcriptional gene silencing (TGS) of target sequences.
RPB5A_ARATH similarity Belongs to the archaeal Rpo5/eukaryotic RPB5 RNA polymerase subunit family.
RPB5A_ARATH tissue specificity Expressed in roots, leaves and seeds, and to a lower level, in flower buds, flowers and siliques.

1 Proteins

Function

Gene Ontology

cellular component
RNA polymerase II, core complex  ? ECO  
RNA polymerase IV complex  ? ECO  
molecular function
DNA-directed 5'-3' RNA polymerase activity  ? ECO  
DNA binding  ? ECO  
biological process
DNA-templated transcription  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets