help  | faq  | software  | BAR
Hide

Oops!

Error: 403

Gene : RAD23C A. thaliana

DB identifier  ? AT3G02540 Secondary Identifier  ? locus:2076944
Name  ? RADIATION SENSITIVE23C Brief Description  Rad23 UV excision repair protein family
TAIR Computational Description  Rad23 UV excision repair protein family;(source:Araport11)
TAIR Curator Summary  Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome.
TAIR Short Description  Rad23 UV excision repair protein family
TAIR Aliases  RAD23-3, RAD23C

0 Gene Rifs

1 Organism

22 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3607  
Location: Chr3:532808-536414 reverse strand

Gene models - RAD23C AT3G02540

? Gene models

Transcripts: 3  Exons: 33  Introns: 30 

Overlapping Features

? Genome features that overlap coordinates of this Gene

21 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RD23C_ARATH RD23C_ARATH-2 function May be involved in nucleotide excision repair (By similarity). Binds and presumably selects ubiquitin-conjugates for destruction. Prefers multiubiquitin chains rather than single ubiquitins, with a binding affinity for 'Lys-48'-linked ubiquitin chains. Acts as a ubiquitin receptor that associates with the 26S proteasomal docking subunit RPN10 for the indirect recognition of ubiquitinated substrates of ubiquitin/26S proteasome-mediated proteolysis (UPP). Involved in UV tolerance in hypocotyls, specifically in dark conditions (PubMed:29283431).
F4JD57_ARATH function Multiubiquitin chain receptor involved in modulation of proteasomal degradation. Involved in nucleotide excision repair.
F4JD57_ARATH RD23C_ARATH RD23C_ARATH-2 similarity Belongs to the RAD23 family.
RD23C_ARATH RD23C_ARATH-2 tissue specificity Widely expressed in the whole plant.

4 Proteins

Function

Gene Ontology

cellular component
cytosol  ? ECO  
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
ubiquitin binding  ? ECO  
polyubiquitin modification-dependent protein binding  ? ECO  
proteasome binding  ? ECO  
damaged DNA binding  ? ECO  
biological process
nucleotide-excision repair  ? ECO  
UV protection  ? ECO  
response to UV  ? ECO  
proteasome-mediated ubiquitin-dependent protein catabolic process  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets