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Gene : AT2G42270 A. thaliana

DB identifier  ? AT2G42270 Secondary Identifier  ? locus:2059969
Brief Description  U5 small nuclear ribonucleoprotein helicase
TAIR Computational Description  U5 small nuclear ribonucleoprotein helicase;(source:Araport11)
TAIR Curator Summary  Similar to yeast Brr2p DEAD/DExH box ATP-dependent RNA helicase.
TAIR Short Description  U5 small nuclear ribonucleoprotein helicase
TAIR Aliases  BRR2b

0 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 7258  
Location: Chr2:17604076-17611333

Gene models - AT2G42270 AT2G42270

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
DEXHD_ARATH function RNA helicase that plays an essential role in pre-mRNA splicing as component of the U5 snRNP and U4/U6-U5 tri-snRNP complexes. Involved in spliceosome assembly, activation and disassembly.

1 Proteins

Function

Gene Ontology

cellular component
plasmodesma  ? ECO  
spliceosomal complex  ? ECO  
cytosol  ? ECO  
molecular function
ATP binding  ? ECO  
ATP hydrolysis activity  ? ECO  
RNA helicase activity  ? ECO  
RNA binding  ? ECO  
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets