help  | faq  | software  | BAR
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect
Hide

Oops!

Error: 403

Gene : AT2G41840 A. thaliana

DB identifier  ? AT2G41840 Secondary Identifier  ? locus:2054406
Brief Description  Ribosomal protein S5 family protein
TAIR Computational Description  Ribosomal protein S5 family protein;(source:Araport11)
TAIR Curator Summary  NULL
TAIR Short Description  Ribosomal protein S5 family protein
TAIR Aliases  uS5x

1 Gene Rifs

1 Organism

35 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1855  
Location: Chr2:17459685-17461539 reverse strand

Gene models - AT2G41840 AT2G41840

? Gene models

Transcripts: 1  Exons: 2  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

3 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RS23_ARATH function Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel. Plays a role in the assembly and function of the 40S ribosomal subunit. Mutations in this protein affects the control of translational fidelity. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (By similarity). Also involved in RNA-directed DNA methylation (RdDM) (PubMed:28229965).
RS23_ARATH similarity Belongs to the universal ribosomal protein uS5 family.

1 Proteins

Function

Gene Ontology

cellular component
plasmodesma  ? ECO  
nucleolus  ? ECO  
cytosol  ? ECO  
cytosolic ribosome  ? ECO  
cytosolic small ribosomal subunit  ? ECO  
molecular function
mRNA binding  ? ECO  
structural constituent of ribosome  ? ECO  
biological process
translation  ? ECO  
regulatory ncRNA-mediated gene silencing  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets