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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39120:CDS:1 | 1164 | Chr2: 16321794-16322957 | Arabidopsis thaliana |
AT2G39130:CDS:11 | 99 | Chr2: 16323171-16323269 | Arabidopsis thaliana |
AT2G39130:CDS:10 | 63 | Chr2: 16323346-16323408 | Arabidopsis thaliana |
AT2G39130:CDS:9 | 44 | Chr2: 16323500-16323543 | Arabidopsis thaliana |
AT2G39130:CDS:7 | 166 | Chr2: 16323633-16323798 | Arabidopsis thaliana |
AT2G39130:CDS:6 | 136 | Chr2: 16323890-16324025 | Arabidopsis thaliana |
AT2G39130:CDS:5 | 401 | Chr2: 16324146-16324546 | Arabidopsis thaliana |
AT2G39130:CDS:4 | 24 | Chr2: 16324996-16325019 | Arabidopsis thaliana |
AT2G39130:CDS:3 | 215 | Chr2: 16325419-16325633 | Arabidopsis thaliana |
AT2G39130:CDS:2 | 326 | Chr2: 16326101-16326426 | Arabidopsis thaliana |
AT2G39130:CDS:1 | 179 | Chr2: 16326566-16326744 | Arabidopsis thaliana |
AT2G39130:CDS:11.1 | 99 | Chr2: 16323171-16323269 | Arabidopsis thaliana |
AT2G39130:CDS:10.1 | 63 | Chr2: 16323346-16323408 | Arabidopsis thaliana |
AT2G39130:CDS:9.1 | 44 | Chr2: 16323500-16323543 | Arabidopsis thaliana |
AT2G39130:CDS:7.1 | 166 | Chr2: 16323633-16323798 | Arabidopsis thaliana |
AT2G39130:CDS:6.1 | 136 | Chr2: 16323890-16324025 | Arabidopsis thaliana |
AT2G39130:CDS:5.1 | 401 | Chr2: 16324146-16324546 | Arabidopsis thaliana |
AT2G39130:CDS:4.1 | 24 | Chr2: 16324996-16325019 | Arabidopsis thaliana |
AT2G39130:CDS:3.1 | 215 | Chr2: 16325419-16325633 | Arabidopsis thaliana |
AT2G39130:CDS:2.1 | 326 | Chr2: 16326101-16326426 | Arabidopsis thaliana |
AT2G39130:CDS:1.1 | 179 | Chr2: 16326566-16326744 | Arabidopsis thaliana |
AT2G39130:CDS:8 | 210 | Chr2: 16323589-16323798 | Arabidopsis thaliana |
AT2G39130:CDS:6.2 | 136 | Chr2: 16323890-16324025 | Arabidopsis thaliana |
AT2G39130:CDS:5.2 | 401 | Chr2: 16324146-16324546 | Arabidopsis thaliana |
AT2G39130:CDS:4.2 | 24 | Chr2: 16324996-16325019 | Arabidopsis thaliana |
AT2G39130:CDS:3.2 | 215 | Chr2: 16325419-16325633 | Arabidopsis thaliana |
AT2G39130:CDS:2.2 | 326 | Chr2: 16326101-16326426 | Arabidopsis thaliana |
AT2G39130:CDS:1.2 | 179 | Chr2: 16326566-16326744 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39120:exon:1 | 1237 | Chr2: 16321721-16322957 | Arabidopsis thaliana |
AT2G39130:exon:16 | 314 | Chr2: 16322956-16323269 | Arabidopsis thaliana |
AT2G39130:exon:2 | 151 | Chr2: 16327156-16327306 | Arabidopsis thaliana |
AT2G39130:exon:15 | 99 | Chr2: 16323171-16323269 | Arabidopsis thaliana |
AT2G39130:exon:14 | 63 | Chr2: 16323346-16323408 | Arabidopsis thaliana |
AT2G39130:exon:13 | 44 | Chr2: 16323500-16323543 | Arabidopsis thaliana |
AT2G39130:exon:11 | 166 | Chr2: 16323633-16323798 | Arabidopsis thaliana |
AT2G39130:exon:3 | 456 | Chr2: 16326851-16327306 | Arabidopsis thaliana |
AT2G39130:exon:12 | 210 | Chr2: 16323589-16323798 | Arabidopsis thaliana |
AT2G39130:exon:10 | 136 | Chr2: 16323890-16324025 | Arabidopsis thaliana |
AT2G39130:exon:9 | 401 | Chr2: 16324146-16324546 | Arabidopsis thaliana |
AT2G39130:exon:8 | 24 | Chr2: 16324996-16325019 | Arabidopsis thaliana |
AT2G39130:exon:7 | 215 | Chr2: 16325419-16325633 | Arabidopsis thaliana |
AT2G39130:exon:6 | 326 | Chr2: 16326101-16326426 | Arabidopsis thaliana |
AT2G39130:exon:5 | 197 | Chr2: 16326566-16326762 | Arabidopsis thaliana |
AT2G39130:exon:4 | 70 | Chr2: 16326851-16326920 | Arabidopsis thaliana |
AT2G39130:exon:1 | 157 | Chr2: 16327156-16327312 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39130:five_prime_UTR:2 | 151 | Chr2: 16327156-16327306 | Arabidopsis thaliana |
AT2G39130:five_prime_UTR:3 | 456 | Chr2: 16326851-16327306 | Arabidopsis thaliana |
AT2G39130:five_prime_UTR:5 | 18 | Chr2: 16326745-16326762 | Arabidopsis thaliana |
AT2G39130:five_prime_UTR:4 | 70 | Chr2: 16326851-16326920 | Arabidopsis thaliana |
AT2G39130:five_prime_UTR:1 | 157 | Chr2: 16327156-16327312 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT2G39120 | locus:2064940 | WTF9 | what's this factor 9 | 1237 | Chr2: 16321721-16322957 | A. thaliana | Ubiquitin carboxyl-terminal hydrolase family protein;(source:Araport11) | Encodes a mitochondrial protein essential for the splicing of group II introns in two mitochondrial genes for which splicing factors had not previously been identified: rpl2 and ccmFc. | Ubiquitin carboxyl-terminal hydrolase family protein | WTF9 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G39120.1 | 1237 | Chr2: 16321721-16322957 |
AT2G39130.1 | 2107 | Chr2: 16322956-16327306 |
AT2G39130.2 | 2127 | Chr2: 16323171-16327306 |
AT2G39130.3 | 1736 | Chr2: 16323589-16327312 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G39130:three_prime_UTR:1 | 215 | Chr2: 16322956-16323170 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
AVT1C_ARATH | similarity | Belongs to the amino acid/polyamine transporter 2 family. Amino acid/auxin permease (AAAP) (TC 2.A.18.5) subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
amino acid transport | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...