help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : SDG21 A. thaliana

DB identifier  ? AT2G24740 Secondary Identifier  ? locus:2047266
Name  ? SET domain group 21 Brief Description  SET domain group 21
TAIR Computational Description  SET domain group 21;(source:Araport11)
TAIR Curator Summary  Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
TAIR Short Description  SET domain group 21
TAIR Aliases  SDG21, SUVH8

1 Gene Rifs

1 Organism

12 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2268  
Location: Chr2:10529690-10531957 reverse strand

Gene models - SDG21 AT2G24740

? Gene models

Transcripts: 1  Exons: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDS: 1, Exon: 1, Gene: 1, mRNA: 1, ncRNA: 1

2 Child Features

0 Cross References

0 Downstream Intergenic Region

0 Located Features

0 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SUVH8_ARATH function Histone methyltransferase. Methylates 'Lys-9' of histone H3. H3 'Lys-9' methylation represents a specific tag for epigenetic transcriptional repression.
SUVH8_ARATH similarity Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
SUVH8_ARATH subcellular location Associates with centromeric constitutive heterochromatin.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
chromosome, centromeric region  ? ECO  
molecular function
zinc ion binding  ? ECO  
DNA binding  ? ECO  
histone H3K9me2 methyltransferase activity  ? ECO  
histone methyltransferase activity  ? ECO  
biological process
leaf development  ? ECO  
epigenetic regulation of gene expression  ? ECO  
regulation of cell size  ? ECO  
methylation  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets