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Gene : SGR5 A. thaliana

DB identifier  ? AT2G01940 Secondary Identifier  ? locus:2041105
Name  ? SHOOT GRAVITROPISM 5 Brief Description  C2H2-like zinc finger protein
TAIR Computational Description  C2H2-like zinc finger protein;(source:Araport11)
TAIR Curator Summary  Encodes a transcription factor that, together with IDD14 and IDD16, regulates auxin biosynthesis and transport and thus aerial organ morphogenesis and gravitropic responses. May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
TAIR Short Description  C2H2-like zinc finger protein
TAIR Aliases  ATIDD15, IDD15, SGR5

4 Gene Rifs

1 Organism

18 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2906  
Location: Chr2:432195-435100

Gene models - SGR5 AT2G01940

? Gene models

Transcripts: 3  Exons: 9  Introns: 6 

Overlapping Features

? Genome features that overlap coordinates of this Gene

11 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
IDD15_ARATH-2 IDD15_ARATH IDD15_ARATH-3 developmental stage Expression levels gradually decrease with aging in both the shoot and root vasculature.
IDD15_ARATH-2 IDD15_ARATH IDD15_ARATH-3 function Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602).
IDD15_ARATH-2 IDD15_ARATH IDD15_ARATH-3 tissue specificity Mainly expressed in the endodermis, the gravity-sensing tissue in inflorescence stems. Mostly present in stems and flowers, and, to a lower extent, in seedlings, hypocotyls, roots and the shoot apical meristem (SAM).

3 Proteins

Function

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets