Genomics
Genome feature
| Region: |
gene
|
Length: |
4092
 |
| Location: | Chr1:28970714-28974805 | ||
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 13, Exons: 8, Five Prime UTR: 1, mRNAs: 2, Three Prime UTRs: 2, Transposable Element: 1, Transposon Fragment: 1
Proteins
Curated comments from UniProt
| Type | Comment | Proteins |
|---|---|---|
| PIN6_ARATH | developmental stage | Expressed during vein formation (PubMed:23437008). Decreased expression during seedling development (PubMed:23922907). |
| PIN6_ARATH | function | Component of the intracellular auxin-transport pathway (PubMed:19506555). Regulates auxin transport and auxin homeostasis (PubMed:23922907). Directly involved in the regulation of nectar production (PubMed:23551385). Involved in unfolded protein response (UPR) activation (PubMed:24180465). Involved in the control of vein patterning (PubMed:23437008, PubMed:24304505). Redundantly with PIN8, inhibits the vein-formation-promoting functions of PIN5 (PubMed:26560462). PIN5, PIN6, and PIN8 control vein network geometry, but they are expressed in mutually exclusive domains of leaf vascular cells (PubMed:26560462). |
| A0A1P8AVV0_ARATH | function | May act as a component of the auxin efflux carrier. |
| A0A1P8AVV0_ARATH PIN6_ARATH | similarity | Belongs to the auxin efflux carrier (TC 2.A.69.1) family. |
| PIN6_ARATH | tissue specificity | Expressed in the vasculature of the primary root, cotyledons, floral stem, sepals and the main transmitting tract of the reproductive silique (PubMed:23922907, PubMed:24487186). Expressed in embryos, shoot meristem, root tip and lateral root meristems (PubMed:23922907). Expressed in the nectaries and the floral organ boundaries of the anthers (PubMed:23551385, PubMed:23922907). Detected in pollen (PubMed:22540348). Expressed in broad subepidermal domains that narrowed to sites of vein formation (PubMed:23437008). Expressed in veins of mature leaves (PubMed:24487186, PubMed:26560462). |
Function
Gene Ontology
| cellular component | |
|---|---|
|
cell periphery
|
ECO |
|
endoplasmic reticulum membrane
|
ECO |
|
plasma membrane
|
ECO |
| molecular function | |
|
auxin efflux transmembrane transporter activity
|
ECO |
|
identical protein binding
|
ECO |
|
protein homodimerization activity
|
ECO |
| biological process | |
|
auxin polar transport
|
ECO |
|
root hair elongation
|
ECO |
|
auxin export across the plasma membrane
|
ECO |
|
negative regulation of ethylene-activated signaling pathway
|
ECO |
|
auxin-activated signaling pathway
|
ECO |
|
negative regulation of lateral root development
|
ECO |
|
basipetal auxin transport
|
ECO |
Interactions
Interaction Network
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