help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : SGA2 A. thaliana

DB identifier  ? AT1G66740 Secondary Identifier  ? locus:2033359
Brief Description  ASF1 like histone chaperone
TAIR Computational Description  ASF1 like histone chaperone;(source:Araport11)
TAIR Curator Summary  Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility. Its expression is regulated during cell cycle progression through E2F transcription factors. The protein interacts with acetylated histones H3 and H4 and HAM acetyltransferases, proteins known to be involved in cell cycle control and DNA repair. Functions redundantly with AT5G38110 during gametogenesis.
TAIR Short Description  ASF1 like histone chaperone
TAIR Aliases  ASF1A, AtSP7, SGA2, SP7

5 Gene Rifs

1 Organism

14 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 1537  
Location: Chr1:24892340-24893876

Gene models - SGA2 AT1G66740

? Gene models

Transcripts: 1  Exons: 3  Introns: 2 

Overlapping Features

? Genome features that overlap coordinates of this Gene

4 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ASF1A_ARATH function Histone chaperone that facilitates histone deposition and histone exchange and removal during nucleosome assembly and disassembly (By similarity). While encoded by a region of the Arabidopsis thaliana genome that is homologous to the Brassica S-locus for self incompatibility, this protein may not play the same role in Arabidopsis thaliana.
ASF1A_ARATH similarity Belongs to the ASF1 family.
ASF1A_ARATH subcellular location Localized at rDNA loci in the nucleolus.
ASF1A_ARATH tissue specificity Expressed in leaves and flower buds.

1 Proteins

Function

Gene Ontology

cellular component
nucleolus  ? ECO  
rDNA protrusion  ? ECO  
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
No terms in this category.
biological process
mitotic cell size control checkpoint signaling  ? ECO  
regulation of cell size  ? ECO  
trichome branching  ? ECO  
cell division  ? ECO  
double-strand break repair via homologous recombination  ? ECO  
chromatin organization  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets