External Links
- Aracyc
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- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
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- Plaza
- pep2pro
- NCBI-Entrez
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53040:CDS:11 | 186 | Chr1: 19764567-19764752 | Arabidopsis thaliana |
AT1G53040:CDS:9 | 200 | Chr1: 19764830-19765029 | Arabidopsis thaliana |
AT1G53040:CDS:7 | 188 | Chr1: 19765120-19765307 | Arabidopsis thaliana |
AT1G53040:CDS:6 | 104 | Chr1: 19765391-19765494 | Arabidopsis thaliana |
AT1G53040:CDS:5 | 203 | Chr1: 19765585-19765787 | Arabidopsis thaliana |
AT1G53040:CDS:4 | 110 | Chr1: 19765875-19765984 | Arabidopsis thaliana |
AT1G53040:CDS:3 | 217 | Chr1: 19766065-19766281 | Arabidopsis thaliana |
AT1G53040:CDS:2 | 270 | Chr1: 19766373-19766642 | Arabidopsis thaliana |
AT1G53040:CDS:1 | 145 | Chr1: 19766726-19766870 | Arabidopsis thaliana |
AT1G53040:CDS:11.1 | 186 | Chr1: 19764567-19764752 | Arabidopsis thaliana |
AT1G53040:CDS:9.1 | 200 | Chr1: 19764830-19765029 | Arabidopsis thaliana |
AT1G53040:CDS:7.1 | 188 | Chr1: 19765120-19765307 | Arabidopsis thaliana |
AT1G53040:CDS:6.1 | 104 | Chr1: 19765391-19765494 | Arabidopsis thaliana |
AT1G53040:CDS:5.1 | 203 | Chr1: 19765585-19765787 | Arabidopsis thaliana |
AT1G53040:CDS:4.1 | 110 | Chr1: 19765875-19765984 | Arabidopsis thaliana |
AT1G53040:CDS:3.1 | 217 | Chr1: 19766065-19766281 | Arabidopsis thaliana |
AT1G53040:CDS:2.1 | 270 | Chr1: 19766373-19766642 | Arabidopsis thaliana |
AT1G53040:CDS:1.1 | 145 | Chr1: 19766726-19766870 | Arabidopsis thaliana |
AT1G53040:CDS:10 | 239 | Chr1: 19764791-19765029 | Arabidopsis thaliana |
AT1G53040:CDS:7.2 | 188 | Chr1: 19765120-19765307 | Arabidopsis thaliana |
AT1G53040:CDS:6.2 | 104 | Chr1: 19765391-19765494 | Arabidopsis thaliana |
AT1G53040:CDS:5.2 | 203 | Chr1: 19765585-19765787 | Arabidopsis thaliana |
AT1G53040:CDS:4.2 | 110 | Chr1: 19765875-19765984 | Arabidopsis thaliana |
AT1G53040:CDS:3.2 | 217 | Chr1: 19766065-19766281 | Arabidopsis thaliana |
AT1G53040:CDS:2.2 | 270 | Chr1: 19766373-19766642 | Arabidopsis thaliana |
AT1G53040:CDS:1.2 | 145 | Chr1: 19766726-19766870 | Arabidopsis thaliana |
AT1G53040:CDS:10.1 | 239 | Chr1: 19764791-19765029 | Arabidopsis thaliana |
AT1G53040:CDS:7.3 | 188 | Chr1: 19765120-19765307 | Arabidopsis thaliana |
AT1G53040:CDS:6.3 | 104 | Chr1: 19765391-19765494 | Arabidopsis thaliana |
AT1G53040:CDS:5.3 | 203 | Chr1: 19765585-19765787 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53040:exon:19 | 508 | Chr1: 19764245-19764752 | Arabidopsis thaliana |
AT1G53040:exon:2 | 170 | Chr1: 19767326-19767495 | Arabidopsis thaliana |
AT1G53040:exon:18 | 728 | Chr1: 19764302-19765029 | Arabidopsis thaliana |
AT1G53040:exon:1 | 182 | Chr1: 19767326-19767507 | Arabidopsis thaliana |
AT1G53040:exon:17 | 723 | Chr1: 19764307-19765029 | Arabidopsis thaliana |
AT1G53040:exon:4 | 114 | Chr1: 19767221-19767334 | Arabidopsis thaliana |
AT1G53040:exon:15 | 200 | Chr1: 19764830-19765029 | Arabidopsis thaliana |
AT1G53040:exon:13 | 188 | Chr1: 19765120-19765307 | Arabidopsis thaliana |
AT1G53040:exon:5 | 239 | Chr1: 19767108-19767346 | Arabidopsis thaliana |
AT1G53040:exon:16 | 443 | Chr1: 19764310-19764752 | Arabidopsis thaliana |
AT1G53040:exon:14 | 478 | Chr1: 19764830-19765307 | Arabidopsis thaliana |
AT1G53040:exon:12 | 104 | Chr1: 19765391-19765494 | Arabidopsis thaliana |
AT1G53040:exon:11 | 203 | Chr1: 19765585-19765787 | Arabidopsis thaliana |
AT1G53040:exon:10 | 110 | Chr1: 19765875-19765984 | Arabidopsis thaliana |
AT1G53040:exon:9 | 217 | Chr1: 19766065-19766281 | Arabidopsis thaliana |
AT1G53040:exon:8 | 270 | Chr1: 19766373-19766642 | Arabidopsis thaliana |
AT1G53040:exon:7 | 291 | Chr1: 19766726-19767016 | Arabidopsis thaliana |
AT1G53040:exon:6 | 34 | Chr1: 19767108-19767141 | Arabidopsis thaliana |
AT1G53040:exon:3 | 168 | Chr1: 19767326-19767493 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53040:five_prime_UTR:2 | 170 | Chr1: 19767326-19767495 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:1 | 182 | Chr1: 19767326-19767507 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:4 | 114 | Chr1: 19767221-19767334 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:5 | 239 | Chr1: 19767108-19767346 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:7 | 146 | Chr1: 19766871-19767016 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:6 | 34 | Chr1: 19767108-19767141 | Arabidopsis thaliana |
AT1G53040:five_prime_UTR:3 | 168 | Chr1: 19767326-19767493 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G53040.1 | 2239 | Chr1: 19764245-19767334 |
AT1G53040.2 | 2295 | Chr1: 19764245-19767495 |
AT1G53040.3 | 2327 | Chr1: 19764302-19767507 |
AT1G53040.4 | 2254 | Chr1: 19764307-19767334 |
AT1G53040.6 | 2265 | Chr1: 19764310-19767346 |
AT1G53040.5 | 2318 | Chr1: 19764310-19767493 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53040:three_prime_UTR:6 | 322 | Chr1: 19764245-19764566 | Arabidopsis thaliana |
AT1G53040:three_prime_UTR:5 | 489 | Chr1: 19764302-19764790 | Arabidopsis thaliana |
AT1G53040:three_prime_UTR:4 | 484 | Chr1: 19764307-19764790 | Arabidopsis thaliana |
AT1G53040:three_prime_UTR:3 | 257 | Chr1: 19764310-19764566 | Arabidopsis thaliana |
AT1G53040:three_prime_UTR:2 | 443 | Chr1: 19764310-19764752 | Arabidopsis thaliana |
AT1G53040:three_prime_UTR:1 | 222 | Chr1: 19764830-19765051 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...