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Gene : ROPGEF11 A. thaliana

DB identifier  ? AT1G52240 Secondary Identifier  ? locus:2018169
Name  ? ROP (rho of plants) guanine nucleotide exchange factor 11 Brief Description  rop guanine nucleotide exchange factor-like protein
TAIR Computational Description  rop guanine nucleotide exchange factor-like protein;(source:Araport11)
TAIR Curator Summary  Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily .
TAIR Short Description  RHO guanyl-nucleotide exchange factor 11
TAIR Aliases  ATROPGEF11, PIRF1, ROPGEF11

1 Gene Rifs

1 Organism

10 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2575  
Location: Chr1:19455495-19458069 reverse strand

Gene models - ROPGEF11 AT1G52240

? Gene models

Transcripts: 1  Exons: 6  Introns: 5 

Overlapping Features

? Genome features that overlap coordinates of this Gene

7 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ROGFB_ARATH function Guanine-nucleotide exchange factor (GEF) that acts as an activator of Rop (Rho of plants) GTPases by promoting the exchange of GDP for GTP. Functions as a light-signaling switch that functions in root growth and development through the activation of Rop in a phytochrome-dependent manner. May act as a negative regulator of phytochrome-mediated primary root development.
ROGFB_ARATH subcellular location Interacts with PHYA and PHYB in the cytoplasm in darkness.
ROGFB_ARATH tissue specificity Highly expressed in elongating regions of roots and pollen grains. Expressed in flowers, and at lower levels in leaves and stems.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
cytoplasm  ? ECO  
molecular function
guanyl-nucleotide exchange factor activity  ? ECO  
biological process
root development  ? ECO  
root hair cell development  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets