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Gene : CLPR1 A. thaliana

DB identifier  ? AT1G49970 Secondary Identifier  ? locus:2031070
Name  ? CLP protease proteolytic subunit 1 Brief Description  CLP protease proteolytic subunit 1
TAIR Computational Description  CLP protease proteolytic subunit 1;(source:Araport11)
TAIR Curator Summary  Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
TAIR Short Description  CLP protease proteolytic subunit 1
TAIR Aliases  ClpR1, CLPR1, NCLPP5, SVR2

2 Gene Rifs

1 Organism

33 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3085  
Location: Chr1:18501570-18504654 reverse strand

Gene models - CLPR1 AT1G49970

? Gene models

Transcripts: 1  Exons: 9  Introns: 8 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CLPR1_ARATH function Required for chloroplast development and differentiation.
CLPR1_ARATH similarity Belongs to the peptidase S14 family.

1 Proteins

Function

Gene Ontology

cellular component
chloroplast thylakoid  ? ECO  
chloroplast envelope  ? ECO  
chloroplast stroma  ? ECO  
nucleus  ? ECO  
chloroplastic endopeptidase Clp complex  ? ECO  
chloroplast  ? ECO  
plastid stroma  ? ECO  
molecular function
ATP-dependent peptidase activity  ? ECO  
RNA binding  ? ECO  
serine-type endopeptidase activity  ? ECO  
biological process
proteolysis  ? ECO  
chloroplast organization  ? ECO  
RNA processing  ? ECO  
rRNA processing  ? ECO  

Interactions

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets