External Links
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 68, Exons: 25, Five Prime UTRs: 5, mRNAs: 4, Three Prime UTRs: 4, Transposable Element: 1, Transposon Fragment: 1
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48490:CDS:18 | 87 | Chr1: 17922345-17922431 | Arabidopsis thaliana |
AT1G48490:CDS:17 | 78 | Chr1: 17922846-17922923 | Arabidopsis thaliana |
AT1G48490:CDS:16 | 174 | Chr1: 17923027-17923200 | Arabidopsis thaliana |
AT1G48490:CDS:15 | 57 | Chr1: 17923302-17923358 | Arabidopsis thaliana |
AT1G48490:CDS:14 | 52 | Chr1: 17923444-17923495 | Arabidopsis thaliana |
AT1G48490:CDS:13 | 89 | Chr1: 17923670-17923758 | Arabidopsis thaliana |
AT1G48490:CDS:12 | 86 | Chr1: 17924002-17924087 | Arabidopsis thaliana |
AT1G48490:CDS:11 | 187 | Chr1: 17924416-17924602 | Arabidopsis thaliana |
AT1G48490:CDS:10 | 93 | Chr1: 17924830-17924922 | Arabidopsis thaliana |
AT1G48490:CDS:9 | 141 | Chr1: 17925013-17925153 | Arabidopsis thaliana |
AT1G48490:CDS:8 | 93 | Chr1: 17925230-17925322 | Arabidopsis thaliana |
AT1G48490:CDS:7 | 232 | Chr1: 17925451-17925682 | Arabidopsis thaliana |
AT1G48490:CDS:6 | 173 | Chr1: 17925832-17926004 | Arabidopsis thaliana |
AT1G48490:CDS:5 | 1374 | Chr1: 17926098-17927471 | Arabidopsis thaliana |
AT1G48490:CDS:4 | 183 | Chr1: 17927553-17927735 | Arabidopsis thaliana |
AT1G48490:CDS:3 | 65 | Chr1: 17927831-17927895 | Arabidopsis thaliana |
AT1G48490:CDS:1 | 544 | Chr1: 17928054-17928597 | Arabidopsis thaliana |
AT1G48490:CDS:18.1 | 87 | Chr1: 17922345-17922431 | Arabidopsis thaliana |
AT1G48490:CDS:17.1 | 78 | Chr1: 17922846-17922923 | Arabidopsis thaliana |
AT1G48490:CDS:16.1 | 174 | Chr1: 17923027-17923200 | Arabidopsis thaliana |
AT1G48490:CDS:15.1 | 57 | Chr1: 17923302-17923358 | Arabidopsis thaliana |
AT1G48490:CDS:14.1 | 52 | Chr1: 17923444-17923495 | Arabidopsis thaliana |
AT1G48490:CDS:13.1 | 89 | Chr1: 17923670-17923758 | Arabidopsis thaliana |
AT1G48490:CDS:12.1 | 86 | Chr1: 17924002-17924087 | Arabidopsis thaliana |
AT1G48490:CDS:11.1 | 187 | Chr1: 17924416-17924602 | Arabidopsis thaliana |
AT1G48490:CDS:10.1 | 93 | Chr1: 17924830-17924922 | Arabidopsis thaliana |
AT1G48490:CDS:9.1 | 141 | Chr1: 17925013-17925153 | Arabidopsis thaliana |
AT1G48490:CDS:8.1 | 93 | Chr1: 17925230-17925322 | Arabidopsis thaliana |
AT1G48490:CDS:7.1 | 232 | Chr1: 17925451-17925682 | Arabidopsis thaliana |
AT1G48490:CDS:6.1 | 173 | Chr1: 17925832-17926004 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48490:exon:1 | 236 | Chr1: 17928719-17928954 | Arabidopsis thaliana |
AT1G48490:exon:25 | 326 | Chr1: 17921900-17922225 | Arabidopsis thaliana |
AT1G48490:exon:3 | 901 | Chr1: 17928054-17928954 | Arabidopsis thaliana |
AT1G48490:exon:24 | 295 | Chr1: 17921931-17922225 | Arabidopsis thaliana |
AT1G48490:exon:22 | 122 | Chr1: 17922310-17922431 | Arabidopsis thaliana |
AT1G48490:exon:6 | 68 | Chr1: 17927831-17927898 | Arabidopsis thaliana |
AT1G48490:exon:4 | 877 | Chr1: 17928054-17928930 | Arabidopsis thaliana |
AT1G48490:exon:23 | 497 | Chr1: 17921935-17922431 | Arabidopsis thaliana |
AT1G48490:exon:21 | 78 | Chr1: 17922846-17922923 | Arabidopsis thaliana |
AT1G48490:exon:20 | 174 | Chr1: 17923027-17923200 | Arabidopsis thaliana |
AT1G48490:exon:19 | 57 | Chr1: 17923302-17923358 | Arabidopsis thaliana |
AT1G48490:exon:18 | 52 | Chr1: 17923444-17923495 | Arabidopsis thaliana |
AT1G48490:exon:17 | 89 | Chr1: 17923670-17923758 | Arabidopsis thaliana |
AT1G48490:exon:16 | 86 | Chr1: 17924002-17924087 | Arabidopsis thaliana |
AT1G48490:exon:15 | 187 | Chr1: 17924416-17924602 | Arabidopsis thaliana |
AT1G48490:exon:14 | 93 | Chr1: 17924830-17924922 | Arabidopsis thaliana |
AT1G48490:exon:13 | 141 | Chr1: 17925013-17925153 | Arabidopsis thaliana |
AT1G48490:exon:12 | 93 | Chr1: 17925230-17925322 | Arabidopsis thaliana |
AT1G48490:exon:11 | 232 | Chr1: 17925451-17925682 | Arabidopsis thaliana |
AT1G48490:exon:10 | 173 | Chr1: 17925832-17926004 | Arabidopsis thaliana |
AT1G48490:exon:9 | 1374 | Chr1: 17926098-17927471 | Arabidopsis thaliana |
AT1G48490:exon:8 | 183 | Chr1: 17927553-17927735 | Arabidopsis thaliana |
AT1G48490:exon:7 | 65 | Chr1: 17927831-17927895 | Arabidopsis thaliana |
AT1G48490:exon:5 | 580 | Chr1: 17928054-17928633 | Arabidopsis thaliana |
AT1G48490:exon:2 | 212 | Chr1: 17928719-17928930 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48490:five_prime_UTR:1 | 236 | Chr1: 17928719-17928954 | Arabidopsis thaliana |
AT1G48490:five_prime_UTR:3 | 357 | Chr1: 17928598-17928954 | Arabidopsis thaliana |
AT1G48490:five_prime_UTR:4 | 333 | Chr1: 17928598-17928930 | Arabidopsis thaliana |
AT1G48490:five_prime_UTR:5 | 36 | Chr1: 17928598-17928633 | Arabidopsis thaliana |
AT1G48490:five_prime_UTR:2 | 212 | Chr1: 17928719-17928930 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G48490.1 | 4341 | Chr1: 17921900-17928954 |
AT1G48490.3 | 4426 | Chr1: 17921900-17928954 |
AT1G48490.4 | 4374 | Chr1: 17921931-17928930 |
AT1G48490.2 | 4366 | Chr1: 17921935-17928930 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G48490:three_prime_UTR:4 | 326 | Chr1: 17921900-17922225 | Arabidopsis thaliana |
AT1G48490:three_prime_UTR:3 | 295 | Chr1: 17921931-17922225 | Arabidopsis thaliana |
AT1G48490:three_prime_UTR:1 | 35 | Chr1: 17922310-17922344 | Arabidopsis thaliana |
AT1G48490:three_prime_UTR:2 | 410 | Chr1: 17921935-17922344 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE59510 | 1005 | Chr1: 17928869-17929873 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1TE59510:transposon_fragment:1 | 1005 | Chr1: 17928869-17929873 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
IRE3_ARATH | similarity | Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. |
Function
Gene Ontology
cellular component | |
---|---|
root hair | ECO |
molecular function | |
ATP binding | ECO |
histone H2AS1 kinase activity | ECO |
protein serine kinase activity | ECO |
kinase activity | ECO |
metal ion binding | ECO |
biological process | |
protein phosphorylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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