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Gene : PRP39 A. thaliana

DB identifier  ? AT1G04080 Secondary Identifier  ? locus:2020265
Brief Description  Tetratricopeptide repeat (TPR)-like superfamily protein
TAIR Computational Description  Tetratricopeptide repeat (TPR)-like superfamily protein;(source:Araport11)
TAIR Curator Summary  Encodes a U1 small nuclear ribonucleoprotein (snRNP) factor involved in alternative splicing.
TAIR Short Description  Tetratricopeptide repeat (TPR)-like superfamily protein
TAIR Aliases  PRP39, PRP39a

4 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5516  
Location: Chr1:1051312-1056827

Gene models - PRP39 AT1G04080

? Gene models

Transcripts: 5  Exons: 60  Introns: 55 

Overlapping Features

? Genome features that overlap coordinates of this Gene

28 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PR39A_ARATH function Involved in pre-mRNA splicing (PubMed:28971960). Involved in the determination of flowering time probably via the modulation of flowering associated genes (e.g. FLC, FT and SOC1) expression (PubMed:17380304).
A0A1P8ATH2_ARATH F4I450_ARATH PR39A_ARATH F4I448_ARATH similarity Belongs to the PRP39 family.
PR39A_ARATH tissue specificity Expressed ubiquitously at low levels, with highest expression in seedling roots, developing siliques and germinating seeds, and, to a lower extent, in flowers, shoot meristems, inflorescence stems, developing seeds and leaves.

4 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
No terms in this category.
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  
photoperiodism, flowering  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets