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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04080:CDS:1 | 235 | Chr1: 1051803-1052037 | Arabidopsis thaliana |
AT1G04080:CDS:2 | 110 | Chr1: 1052160-1052269 | Arabidopsis thaliana |
AT1G04080:CDS:3 | 230 | Chr1: 1052546-1052775 | Arabidopsis thaliana |
AT1G04080:CDS:5 | 168 | Chr1: 1053327-1053494 | Arabidopsis thaliana |
AT1G04080:CDS:7 | 394 | Chr1: 1053807-1054200 | Arabidopsis thaliana |
AT1G04080:CDS:8 | 101 | Chr1: 1054285-1054385 | Arabidopsis thaliana |
AT1G04080:CDS:9 | 64 | Chr1: 1054465-1054528 | Arabidopsis thaliana |
AT1G04080:CDS:10 | 144 | Chr1: 1054663-1054806 | Arabidopsis thaliana |
AT1G04080:CDS:11 | 153 | Chr1: 1054936-1055088 | Arabidopsis thaliana |
AT1G04080:CDS:12 | 117 | Chr1: 1055174-1055290 | Arabidopsis thaliana |
AT1G04080:CDS:13 | 231 | Chr1: 1055478-1055708 | Arabidopsis thaliana |
AT1G04080:CDS:14 | 306 | Chr1: 1055798-1056103 | Arabidopsis thaliana |
AT1G04080:CDS:15 | 102 | Chr1: 1056187-1056288 | Arabidopsis thaliana |
AT1G04080:CDS:16 | 117 | Chr1: 1056434-1056550 | Arabidopsis thaliana |
AT1G04080:CDS:1.1 | 235 | Chr1: 1051803-1052037 | Arabidopsis thaliana |
AT1G04080:CDS:2.1 | 110 | Chr1: 1052160-1052269 | Arabidopsis thaliana |
AT1G04080:CDS:3.1 | 230 | Chr1: 1052546-1052775 | Arabidopsis thaliana |
AT1G04080:CDS:5.1 | 168 | Chr1: 1053327-1053494 | Arabidopsis thaliana |
AT1G04080:CDS:7.1 | 394 | Chr1: 1053807-1054200 | Arabidopsis thaliana |
AT1G04080:CDS:10.1 | 144 | Chr1: 1054663-1054806 | Arabidopsis thaliana |
AT1G04080:CDS:11.1 | 153 | Chr1: 1054936-1055088 | Arabidopsis thaliana |
AT1G04080:CDS:12.1 | 117 | Chr1: 1055174-1055290 | Arabidopsis thaliana |
AT1G04080:CDS:13.1 | 231 | Chr1: 1055478-1055708 | Arabidopsis thaliana |
AT1G04080:CDS:14.1 | 306 | Chr1: 1055798-1056103 | Arabidopsis thaliana |
AT1G04080:CDS:15.1 | 102 | Chr1: 1056187-1056288 | Arabidopsis thaliana |
AT1G04080:CDS:16.1 | 117 | Chr1: 1056434-1056550 | Arabidopsis thaliana |
AT1G04080:CDS:1.2 | 235 | Chr1: 1051803-1052037 | Arabidopsis thaliana |
AT1G04080:CDS:2.2 | 110 | Chr1: 1052160-1052269 | Arabidopsis thaliana |
AT1G04080:CDS:3.2 | 230 | Chr1: 1052546-1052775 | Arabidopsis thaliana |
AT1G04080:CDS:5.2 | 168 | Chr1: 1053327-1053494 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04080:exon:1 | 180 | Chr1: 1051312-1051491 | Arabidopsis thaliana |
AT1G04080:exon:12 | 101 | Chr1: 1054285-1054385 | Arabidopsis thaliana |
AT1G04080:exon:13 | 64 | Chr1: 1054465-1054528 | Arabidopsis thaliana |
AT1G04080:exon:23 | 394 | Chr1: 1056434-1056827 | Arabidopsis thaliana |
AT1G04080:exon:2 | 149 | Chr1: 1051343-1051491 | Arabidopsis thaliana |
AT1G04080:exon:4 | 269 | Chr1: 1051769-1052037 | Arabidopsis thaliana |
AT1G04080:exon:22 | 386 | Chr1: 1056434-1056819 | Arabidopsis thaliana |
AT1G04080:exon:3 | 504 | Chr1: 1051534-1052037 | Arabidopsis thaliana |
AT1G04080:exon:5 | 110 | Chr1: 1052160-1052269 | Arabidopsis thaliana |
AT1G04080:exon:6 | 230 | Chr1: 1052546-1052775 | Arabidopsis thaliana |
AT1G04080:exon:21 | 332 | Chr1: 1056434-1056765 | Arabidopsis thaliana |
AT1G04080:exon:7 | 24 | Chr1: 1052752-1052775 | Arabidopsis thaliana |
AT1G04080:exon:9 | 399 | Chr1: 1053096-1053494 | Arabidopsis thaliana |
AT1G04080:exon:8 | 435 | Chr1: 1052753-1053187 | Arabidopsis thaliana |
AT1G04080:exon:10 | 168 | Chr1: 1053327-1053494 | Arabidopsis thaliana |
AT1G04080:exon:11 | 394 | Chr1: 1053807-1054200 | Arabidopsis thaliana |
AT1G04080:exon:14 | 144 | Chr1: 1054663-1054806 | Arabidopsis thaliana |
AT1G04080:exon:15 | 153 | Chr1: 1054936-1055088 | Arabidopsis thaliana |
AT1G04080:exon:16 | 117 | Chr1: 1055174-1055290 | Arabidopsis thaliana |
AT1G04080:exon:17 | 231 | Chr1: 1055478-1055708 | Arabidopsis thaliana |
AT1G04080:exon:18 | 306 | Chr1: 1055798-1056103 | Arabidopsis thaliana |
AT1G04080:exon:19 | 102 | Chr1: 1056187-1056288 | Arabidopsis thaliana |
AT1G04080:exon:20 | 318 | Chr1: 1056434-1056751 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04080:five_prime_UTR:1 | 180 | Chr1: 1051312-1051491 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:2 | 149 | Chr1: 1051343-1051491 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:4 | 34 | Chr1: 1051769-1051802 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:3 | 269 | Chr1: 1051534-1051802 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:5 | 24 | Chr1: 1052752-1052775 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:7 | 313 | Chr1: 1053096-1053408 | Arabidopsis thaliana |
AT1G04080:five_prime_UTR:6 | 418 | Chr1: 1052753-1053170 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G04080.3 | 2963 | Chr1: 1051312-1056827 |
AT1G04080.1 | 2759 | Chr1: 1051343-1056819 |
AT1G04080.4 | 2791 | Chr1: 1051534-1056765 |
AT1G04080.5 | 2188 | Chr1: 1052752-1056751 |
AT1G04080.2 | 2368 | Chr1: 1052753-1056751 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G04080:three_prime_UTR:4 | 277 | Chr1: 1056551-1056827 | Arabidopsis thaliana |
AT1G04080:three_prime_UTR:3 | 269 | Chr1: 1056551-1056819 | Arabidopsis thaliana |
AT1G04080:three_prime_UTR:2 | 215 | Chr1: 1056551-1056765 | Arabidopsis thaliana |
AT1G04080:three_prime_UTR:1 | 201 | Chr1: 1056551-1056751 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PR39A_ARATH | function | Involved in pre-mRNA splicing (PubMed:28971960). Involved in the determination of flowering time probably via the modulation of flowering associated genes (e.g. FLC, FT and SOC1) expression (PubMed:17380304). |
A0A1P8ATH2_ARATH F4I450_ARATH PR39A_ARATH F4I448_ARATH | similarity | Belongs to the PRP39 family. |
PR39A_ARATH | tissue specificity | Expressed ubiquitously at low levels, with highest expression in seedling roots, developing siliques and germinating seeds, and, to a lower extent, in flowers, shoot meristems, inflorescence stems, developing seeds and leaves. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
No terms in this category. | |
biological process | |
RNA splicing | ECO |
mRNA processing | ECO |
photoperiodism, flowering | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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