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Gene : CLPP5 A. thaliana

DB identifier  ? AT1G02560 Secondary Identifier  ? locus:2196120
Name  ? nuclear encoded CLP protease 5 Brief Description  nuclear encoded CLP protease 5
TAIR Computational Description  nuclear encoded CLP protease 5;(source:Araport11)
TAIR Curator Summary  One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). The mRNA is cell-to-cell mobile.
TAIR Short Description  nuclear encoded CLP protease 5
TAIR Aliases  CLPP5, NCLPP1, NCLPP5

0 Gene Rifs

1 Organism

34 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2388  
Location: Chr1:537740-540127

Gene models - CLPP5 AT1G02560

? Gene models

Transcripts: 1  Exons: 9  Introns: 8 

Overlapping Features

? Genome features that overlap coordinates of this Gene

10 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
CLPP5_ARATH function Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins (By similarity).
CLPP5_ARATH similarity Belongs to the peptidase S14 family.
CLPP5_ARATH tissue specificity Mostly expressed in leaves. Also detected in stems, and to a lower extent, in roots (at protein level).

1 Proteins

Function

Gene Ontology

cellular component
chloroplast thylakoid  ? ECO  
chloroplast envelope  ? ECO  
chloroplast stroma  ? ECO  
thylakoid  ? ECO  
chloroplastic endopeptidase Clp complex  ? ECO  
extracellular region  ? ECO  
chloroplast  ? ECO  
plastid stroma  ? ECO  
molecular function
ATP-dependent peptidase activity  ? ECO  
serine-type endopeptidase activity  ? ECO  
biological process
proteolysis  ? ECO  

Interactions

Interaction Network

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets