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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56510:CDS:1 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:4 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:CDS:6 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
AT5G56510:CDS:1.1 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2.1 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3.1 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:4.1 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:CDS:6.1 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
AT5G56510:CDS:1.2 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2.2 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3.2 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:4.2 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:CDS:6.2 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
AT5G56510:CDS:1.3 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2.3 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3.3 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:4.3 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:CDS:6.3 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
AT5G56510:CDS:1.4 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2.4 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3.4 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:5 | 268 | Chr5: 22883401-22883668 | Arabidopsis thaliana |
AT5G56510:CDS:1.5 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:CDS:2.5 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:CDS:3.5 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:CDS:4.4 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:CDS:6.4 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56510:exon:15 | 151 | Chr5: 22883937-22884087 | Arabidopsis thaliana |
AT5G56510:exon:1 | 322 | Chr5: 22880687-22881008 | Arabidopsis thaliana |
AT5G56510:exon:13 | 353 | Chr5: 22883735-22884087 | Arabidopsis thaliana |
AT5G56510:exon:12 | 343 | Chr5: 22883735-22884077 | Arabidopsis thaliana |
AT5G56510:exon:2 | 54 | Chr5: 22881100-22881153 | Arabidopsis thaliana |
AT5G56510:exon:3 | 1170 | Chr5: 22881648-22882817 | Arabidopsis thaliana |
AT5G56510:exon:11 | 116 | Chr5: 22883735-22883850 | Arabidopsis thaliana |
AT5G56510:exon:14 | 141 | Chr5: 22883937-22884077 | Arabidopsis thaliana |
AT5G56510:exon:4 | 1118 | Chr5: 22881700-22882817 | Arabidopsis thaliana |
AT5G56510:exon:9 | 283 | Chr5: 22883401-22883683 | Arabidopsis thaliana |
AT5G56510:exon:5 | 1097 | Chr5: 22881721-22882817 | Arabidopsis thaliana |
AT5G56510:exon:6 | 163 | Chr5: 22882907-22883069 | Arabidopsis thaliana |
AT5G56510:exon:7 | 164 | Chr5: 22883150-22883313 | Arabidopsis thaliana |
AT5G56510:exon:8 | 259 | Chr5: 22883401-22883659 | Arabidopsis thaliana |
AT5G56510:exon:10 | 108 | Chr5: 22883735-22883842 | Arabidopsis thaliana |
AT5G08575:exon:1 | 199 | Chr5: 22880926-22881124 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56510:five_prime_UTR:1 | 322 | Chr5: 22880687-22881008 | Arabidopsis thaliana |
AT5G56510:five_prime_UTR:2 | 54 | Chr5: 22881100-22881153 | Arabidopsis thaliana |
AT5G56510:five_prime_UTR:3 | 73 | Chr5: 22881648-22881720 | Arabidopsis thaliana |
AT5G56510:five_prime_UTR:4 | 21 | Chr5: 22881700-22881720 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G08575 | AT5G08575 | 199 | Chr5: 22880926-22881124 | A. thaliana | None;(source:Araport11) | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G56510.1 | 2345 | Chr5: 22880687-22884087 |
AT5G56510.2 | 2431 | Chr5: 22880687-22884087 |
AT5G56510.3 | 2153 | Chr5: 22881100-22884077 |
AT5G56510.4 | 2067 | Chr5: 22881100-22884077 |
AT5G56510.5 | 1728 | Chr5: 22881700-22883683 |
AT5G56510.6 | 1791 | Chr5: 22881721-22883842 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G56510:three_prime_UTR:6 | 151 | Chr5: 22883937-22884087 | Arabidopsis thaliana |
AT5G56510:three_prime_UTR:4 | 245 | Chr5: 22883843-22884087 | Arabidopsis thaliana |
AT5G56510:three_prime_UTR:3 | 235 | Chr5: 22883843-22884077 | Arabidopsis thaliana |
AT5G56510:three_prime_UTR:2 | 8 | Chr5: 22883843-22883850 | Arabidopsis thaliana |
AT5G56510:three_prime_UTR:5 | 141 | Chr5: 22883937-22884077 | Arabidopsis thaliana |
AT5G56510:three_prime_UTR:1 | 15 | Chr5: 22883669-22883683 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
PUM12_ARATH | function | Sequence-specific RNA-binding protein that regulates translation and mRNA stability by binding the 3'-UTR of target mRNAs. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
cytoplasm | ECO |
molecular function | |
RNA binding | ECO |
biological process | |
regulation of translation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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