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Gene : AT5G56040 A. thaliana

DB identifier  ? AT5G56040 Secondary Identifier  ? locus:2161825
Brief Description  Leucine-rich receptor-like protein kinase family protein
TAIR Computational Description  Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary  Member of ROOT MERISTEM GROWTH FACTOR family of peptide ligands.
TAIR Short Description  Leucine-rich receptor-like protein kinase family protein
TAIR Aliases  RGI4, SKM2

0 Gene Rifs

1 Organism

20 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3823  
Location: Chr5:22694823-22698645

Gene models - AT5G56040 AT5G56040

? Gene models

Transcripts: 2  Exons: 3  Introns: 1 

Overlapping Features

? Genome features that overlap coordinates of this Gene

5 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
RGI4_ARATH RGI4_ARATH-2 developmental stage Present throughout the root, starting from the transition zone and including transition and elongation zones, but absent from the meristem.
RGI4_ARATH RGI4_ARATH-2 function Receptor with a serine/threonine-protein kinase activity (By similarity). Together with SKM1, LRR-rich receptor-like kinase (LRR-RLK) required for male fertility by the perception of CLE43 and CLE45 peptides and the transduction of their promoting action in pollen tubes, especially under relatively high temperature (at 30 degrees Celsius), thus conferring tolerance against high temperature probably through the maintenance of mitochondrial activity (PubMed:23910659). Seems to not be involved in the perception of CLE45 peptide in roots (PubMed:27354416). Together with RGI1, RGI2, RGI3, RGI4 and RGI5, acts as receptor of RGF1, a peptide hormone that maintains the postembryonic root stem cell niche by regulating the expression levels and patterns of the transcription factor PLETHORA (PLT) (PubMed:27229311, PubMed:27229312). Links RGF1 signal with its downstream components (PubMed:27229311).
RGI4_ARATH RGI4_ARATH-2 similarity Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
RGI4_ARATH RGI4_ARATH-2 tissue specificity Expressed in floers, pollen grains and stipules (PubMed:23910659, PubMed:27229311). Present in roots (PubMed:27229311, PubMed:27354416).

2 Proteins

Function

Gene Ontology

cellular component
plasma membrane  ? ECO  
molecular function
ATP binding  ? ECO  
histone H2AS1 kinase activity  ? ECO  
peptide receptor activity  ? ECO  
identical protein binding  ? ECO  
peptide binding  ? ECO  
biological process
regulation of root meristem growth  ? ECO  
protein phosphorylation  ? ECO  
maintenance of meristem identity  ? ECO  
regulation of pollen tube growth  ? ECO  
response to temperature stimulus  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets