External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53900:CDS:8 | 597 | Chr5: 21881375-21881971 | Arabidopsis thaliana |
AT5G53900:CDS:7 | 57 | Chr5: 21882062-21882118 | Arabidopsis thaliana |
AT5G53900:CDS:6 | 42 | Chr5: 21882191-21882232 | Arabidopsis thaliana |
AT5G53900:CDS:5 | 102 | Chr5: 21882329-21882430 | Arabidopsis thaliana |
AT5G53900:CDS:8.1 | 597 | Chr5: 21881375-21881971 | Arabidopsis thaliana |
AT5G53900:CDS:7.1 | 57 | Chr5: 21882062-21882118 | Arabidopsis thaliana |
AT5G53900:CDS:6.1 | 42 | Chr5: 21882191-21882232 | Arabidopsis thaliana |
AT5G53900:CDS:4 | 106 | Chr5: 21882329-21882434 | Arabidopsis thaliana |
AT5G53900:CDS:3 | 144 | Chr5: 21882591-21882734 | Arabidopsis thaliana |
AT5G53900:CDS:2 | 51 | Chr5: 21882857-21882907 | Arabidopsis thaliana |
AT5G53900:CDS:1 | 137 | Chr5: 21882997-21883133 | Arabidopsis thaliana |
AT5G53900:CDS:8.2 | 597 | Chr5: 21881375-21881971 | Arabidopsis thaliana |
AT5G53900:CDS:7.2 | 57 | Chr5: 21882062-21882118 | Arabidopsis thaliana |
AT5G53900:CDS:6.2 | 42 | Chr5: 21882191-21882232 | Arabidopsis thaliana |
AT5G53900:CDS:5.1 | 102 | Chr5: 21882329-21882430 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53895:exon:2 | 370 | Chr5: 21880835-21881204 | Arabidopsis thaliana |
AT5G53900:exon:6 | 406 | Chr5: 21882329-21882734 | Arabidopsis thaliana |
AT5G53900:exon:11 | 830 | Chr5: 21881142-21881971 | Arabidopsis thaliana |
AT5G53900:exon:7 | 106 | Chr5: 21882329-21882434 | Arabidopsis thaliana |
AT5G53900:exon:4 | 144 | Chr5: 21882591-21882734 | Arabidopsis thaliana |
AT5G53900:exon:3 | 51 | Chr5: 21882857-21882907 | Arabidopsis thaliana |
AT5G53900:exon:1 | 437 | Chr5: 21882997-21883433 | Arabidopsis thaliana |
AT5G53900:exon:10 | 597 | Chr5: 21881375-21881971 | Arabidopsis thaliana |
AT5G53900:exon:9 | 57 | Chr5: 21882062-21882118 | Arabidopsis thaliana |
AT5G53900:exon:8 | 42 | Chr5: 21882191-21882232 | Arabidopsis thaliana |
AT5G53900:exon:5 | 579 | Chr5: 21882329-21882907 | Arabidopsis thaliana |
AT5G53900:exon:2 | 427 | Chr5: 21882997-21883423 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53900:five_prime_UTR:6 | 304 | Chr5: 21882431-21882734 | Arabidopsis thaliana |
AT5G53900:five_prime_UTR:4 | 51 | Chr5: 21882857-21882907 | Arabidopsis thaliana |
AT5G53900:five_prime_UTR:2 | 437 | Chr5: 21882997-21883433 | Arabidopsis thaliana |
AT5G53900:five_prime_UTR:1 | 300 | Chr5: 21883134-21883433 | Arabidopsis thaliana |
AT5G53900:five_prime_UTR:5 | 477 | Chr5: 21882431-21882907 | Arabidopsis thaliana |
AT5G53900:five_prime_UTR:3 | 427 | Chr5: 21882997-21883423 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT5G53895 | locus:504954985 | AT5G53895 | 613 | Chr5: 21880592-21881204 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | NULL |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G53895.1 | 512 | Chr5: 21880592-21881204 |
AT5G53900.1 | 1823 | Chr5: 21881142-21883433 |
AT5G53900.2 | 1667 | Chr5: 21881142-21883433 |
AT5G53900.3 | 1702 | Chr5: 21881375-21883423 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G53895:three_prime_UTR:1 | 88 | Chr5: 21881117-21881204 | Arabidopsis thaliana |
AT5G53900:three_prime_UTR:1 | 233 | Chr5: 21881142-21881374 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
No terms in this category. | |
molecular function | |
DNA binding | ECO |
biological process | |
No terms in this category. |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...