External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 27, Exons: 17, Five Prime UTRs: 3, mRNAs: 2, Three Prime UTRs: 2, Transposable Elements: 2, Transposon Fragments: 2
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24450:CDS:1 | 135 | Chr5: 8348780-8348914 | Arabidopsis thaliana |
AT5G24450:CDS:2 | 250 | Chr5: 8349166-8349415 | Arabidopsis thaliana |
AT5G24450:CDS:3 | 90 | Chr5: 8349506-8349595 | Arabidopsis thaliana |
AT5G24450:CDS:4 | 91 | Chr5: 8349688-8349778 | Arabidopsis thaliana |
AT5G24450:CDS:5 | 67 | Chr5: 8349903-8349969 | Arabidopsis thaliana |
AT5G24450:CDS:6 | 43 | Chr5: 8350384-8350426 | Arabidopsis thaliana |
AT5G24450:CDS:7 | 172 | Chr5: 8350545-8350716 | Arabidopsis thaliana |
AT5G24450:CDS:8 | 99 | Chr5: 8350789-8350887 | Arabidopsis thaliana |
AT5G24450:CDS:9 | 69 | Chr5: 8351239-8351307 | Arabidopsis thaliana |
AT5G24450:CDS:10 | 139 | Chr5: 8351693-8351831 | Arabidopsis thaliana |
AT5G24450:CDS:11 | 202 | Chr5: 8352039-8352240 | Arabidopsis thaliana |
AT5G24450:CDS:12 | 92 | Chr5: 8352591-8352682 | Arabidopsis thaliana |
AT5G24450:CDS:13 | 40 | Chr5: 8352783-8352822 | Arabidopsis thaliana |
AT5G24450:CDS:15 | 176 | Chr5: 8352955-8353130 | Arabidopsis thaliana |
AT5G24450:CDS:1.1 | 135 | Chr5: 8348780-8348914 | Arabidopsis thaliana |
AT5G24450:CDS:2.1 | 250 | Chr5: 8349166-8349415 | Arabidopsis thaliana |
AT5G24450:CDS:3.1 | 90 | Chr5: 8349506-8349595 | Arabidopsis thaliana |
AT5G24450:CDS:4.1 | 91 | Chr5: 8349688-8349778 | Arabidopsis thaliana |
AT5G24450:CDS:5.1 | 67 | Chr5: 8349903-8349969 | Arabidopsis thaliana |
AT5G24450:CDS:6.1 | 43 | Chr5: 8350384-8350426 | Arabidopsis thaliana |
AT5G24450:CDS:7.1 | 172 | Chr5: 8350545-8350716 | Arabidopsis thaliana |
AT5G24450:CDS:8.1 | 99 | Chr5: 8350789-8350887 | Arabidopsis thaliana |
AT5G24450:CDS:9.1 | 69 | Chr5: 8351239-8351307 | Arabidopsis thaliana |
AT5G24450:CDS:10.1 | 139 | Chr5: 8351693-8351831 | Arabidopsis thaliana |
AT5G24450:CDS:11.1 | 202 | Chr5: 8352039-8352240 | Arabidopsis thaliana |
AT5G24450:CDS:12.1 | 92 | Chr5: 8352591-8352682 | Arabidopsis thaliana |
AT5G24450:CDS:14 | 84 | Chr5: 8352783-8352866 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24450:exon:1 | 223 | Chr5: 8348160-8348382 | Arabidopsis thaliana |
AT5G24450:exon:15 | 40 | Chr5: 8352783-8352822 | Arabidopsis thaliana |
AT5G24450:exon:17 | 349 | Chr5: 8352955-8353303 | Arabidopsis thaliana |
AT5G24450:exon:2 | 209 | Chr5: 8348174-8348382 | Arabidopsis thaliana |
AT5G24450:exon:3 | 159 | Chr5: 8348756-8348914 | Arabidopsis thaliana |
AT5G24450:exon:4 | 250 | Chr5: 8349166-8349415 | Arabidopsis thaliana |
AT5G24450:exon:5 | 90 | Chr5: 8349506-8349595 | Arabidopsis thaliana |
AT5G24450:exon:6 | 91 | Chr5: 8349688-8349778 | Arabidopsis thaliana |
AT5G24450:exon:7 | 67 | Chr5: 8349903-8349969 | Arabidopsis thaliana |
AT5G24450:exon:8 | 43 | Chr5: 8350384-8350426 | Arabidopsis thaliana |
AT5G24450:exon:9 | 172 | Chr5: 8350545-8350716 | Arabidopsis thaliana |
AT5G24450:exon:10 | 99 | Chr5: 8350789-8350887 | Arabidopsis thaliana |
AT5G24450:exon:11 | 69 | Chr5: 8351239-8351307 | Arabidopsis thaliana |
AT5G24450:exon:12 | 139 | Chr5: 8351693-8351831 | Arabidopsis thaliana |
AT5G24450:exon:13 | 202 | Chr5: 8352039-8352240 | Arabidopsis thaliana |
AT5G24450:exon:14 | 92 | Chr5: 8352591-8352682 | Arabidopsis thaliana |
AT5G24450:exon:16 | 521 | Chr5: 8352783-8353303 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24450:five_prime_UTR:1 | 223 | Chr5: 8348160-8348382 | Arabidopsis thaliana |
AT5G24450:five_prime_UTR:2 | 209 | Chr5: 8348174-8348382 | Arabidopsis thaliana |
AT5G24450:five_prime_UTR:3 | 24 | Chr5: 8348756-8348779 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT5G24450.1 | 2085 | Chr5: 8348160-8353303 |
AT5G24450.2 | 2203 | Chr5: 8348174-8353303 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5G24450:three_prime_UTR:2 | 173 | Chr5: 8353131-8353303 | Arabidopsis thaliana |
AT5G24450:three_prime_UTR:1 | 437 | Chr5: 8352867-8353303 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE30190 | 85 | Chr5: 8353117-8353201 | Arabidopsis thaliana |
AT5TE30195 | 1472 | Chr5: 8353202-8354673 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT5TE30190:transposon_fragment:1 | 85 | Chr5: 8353117-8353201 | Arabidopsis thaliana |
AT5TE30195:transposon_fragment:1 | 1472 | Chr5: 8353202-8354673 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
transcription factor TFIIIC complex | ECO |
nucleus | ECO |
molecular function | |
DNA binding | ECO |
biological process | |
transcription initiation at RNA polymerase III promoter | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...