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Gene : EMB3011 A. thaliana

DB identifier  ? AT5G13010 Secondary Identifier  ? locus:2182340
Name  ? embryo defective 3011 Brief Description  RNA helicase family protein
TAIR Computational Description  RNA helicase family protein;(source:Araport11)
TAIR Curator Summary  Encodes a nuclear localized DEAH-box containing protein that is involved in miRNA biogenesis. Loss of function mutants are embryo lethal. Gene silencing experiments demonstrated its role in the localization of DCL-1 and HYL1 to the nuclear D-body. In silenced lines, miRNA production is suppressed and plants have developmental abnormalities and are hypersensitive to fungal pathogens.
TAIR Short Description  RNA helicase family protein
TAIR Aliases  CUV, EMB3011, FEY, PINP1, PRP16

0 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 6606  
Location: Chr5:4122400-4129005

Gene models - EMB3011 AT5G13010

? Gene models

Transcripts: 1  Exons: 17  Introns: 16 

Overlapping Features

? Genome features that overlap coordinates of this Gene

18 Child Features

0 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
PRP16_ARATH developmental stage Preferentially expressed in developing organs.
PRP16_ARATH function Involved in pre-mRNA splicing by mediating structural transitions of the spliceosome during the catalytic step. Facilitates expression of genes involved in auxin-mediated development including male-gametophyte transmission, apical-basal patterning of embryonic and gynoecium development, stamen development, phyllotactic flower positioning, and vascular development (PubMed:25384462). Also involved in root-meristem maintenance and planar polarity of root-hair positioning (PubMed:26237376). Acts as a component of RNA silencing that regulates distinct classes of endogenous small RNAs. Functions as a positive regulator of plant immunity (PubMed:25902521).
PRP16_ARATH similarity Belongs to the DEAD box helicase family. DEAH subfamily. PRP16 sub-subfamily.
PRP16_ARATH subcellular location Binds to the spliceosome.

1 Proteins

Function

Interactions

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Expression

eFP Visualization

Data Source: BAR




Co-expression

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Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

6 Data Sets