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Gene : AL1 A. thaliana

DB identifier  ? AT5G05610 Secondary Identifier  ? locus:2169707
Name  ? alfin-like 1 Brief Description  alfin-like 1
TAIR Computational Description  alfin-like 1;(source:Araport11)
TAIR Curator Summary  Encodes a member of the Alfin1-like family of nuclear-localized PHD (plant homeodomain) domain containing proteins. All AL proteins except AL3 bind to di- or trimethylated histone H3 (H3K4me3/2). Members of this family include: AT5G05610 (AL1), AT3G11200 (AL2), AT3G42790 (AL3), AT5G26210 (AL4), AT5G20510 (AL5), AT2G02470 (AL6), AT1G14510 (AL7).
TAIR Short Description  alfin-like 1
TAIR Aliases  AL1

0 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 2219  
Location: Chr5:1676889-1679107 reverse strand

Gene models - AL1 AT5G05610

? Gene models

Transcripts: 2  Exons: 11  Introns: 9 

Overlapping Features

? Genome features that overlap coordinates of this Gene

9 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ALFL1_ARATH function Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.
ALFL1_ARATH similarity Belongs to the Alfin family.
ALFL1_ARATH tissue specificity Ubiquitously expressed.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
methylated histone binding  ? ECO  
transcription cis-regulatory region binding  ? ECO  
metal ion binding  ? ECO  
biological process
regulation of DNA-templated transcription  ? ECO  
chromatin organization  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

7 Data Sets