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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39280:CDS:19 | 51 | Chr4: 18280292-18280342 | Arabidopsis thaliana |
AT4G39280:CDS:17 | 55 | Chr4: 18281792-18281846 | Arabidopsis thaliana |
AT4G39280:CDS:16 | 126 | Chr4: 18281920-18282045 | Arabidopsis thaliana |
AT4G39280:CDS:15 | 67 | Chr4: 18282128-18282194 | Arabidopsis thaliana |
AT4G39280:CDS:14 | 72 | Chr4: 18282281-18282352 | Arabidopsis thaliana |
AT4G39280:CDS:13 | 97 | Chr4: 18282463-18282559 | Arabidopsis thaliana |
AT4G39280:CDS:12 | 97 | Chr4: 18282643-18282739 | Arabidopsis thaliana |
AT4G39280:CDS:11 | 85 | Chr4: 18282822-18282906 | Arabidopsis thaliana |
AT4G39280:CDS:10 | 77 | Chr4: 18283028-18283104 | Arabidopsis thaliana |
AT4G39280:CDS:9 | 39 | Chr4: 18283228-18283266 | Arabidopsis thaliana |
AT4G39280:CDS:8 | 38 | Chr4: 18283351-18283388 | Arabidopsis thaliana |
AT4G39280:CDS:7 | 85 | Chr4: 18283496-18283580 | Arabidopsis thaliana |
AT4G39280:CDS:6 | 93 | Chr4: 18283671-18283763 | Arabidopsis thaliana |
AT4G39280:CDS:5 | 56 | Chr4: 18283847-18283902 | Arabidopsis thaliana |
AT4G39280:CDS:4 | 57 | Chr4: 18283997-18284053 | Arabidopsis thaliana |
AT4G39280:CDS:3 | 90 | Chr4: 18284170-18284259 | Arabidopsis thaliana |
AT4G39280:CDS:2 | 126 | Chr4: 18284353-18284478 | Arabidopsis thaliana |
AT4G39280:CDS:1 | 147 | Chr4: 18284685-18284831 | Arabidopsis thaliana |
AT4G39280:CDS:18 | 51 | Chr4: 18281641-18281691 | Arabidopsis thaliana |
AT4G39280:CDS:17.1 | 55 | Chr4: 18281792-18281846 | Arabidopsis thaliana |
AT4G39280:CDS:16.1 | 126 | Chr4: 18281920-18282045 | Arabidopsis thaliana |
AT4G39280:CDS:15.1 | 67 | Chr4: 18282128-18282194 | Arabidopsis thaliana |
AT4G39280:CDS:14.1 | 72 | Chr4: 18282281-18282352 | Arabidopsis thaliana |
AT4G39280:CDS:13.1 | 97 | Chr4: 18282463-18282559 | Arabidopsis thaliana |
AT4G39280:CDS:12.1 | 97 | Chr4: 18282643-18282739 | Arabidopsis thaliana |
AT4G39280:CDS:11.1 | 85 | Chr4: 18282822-18282906 | Arabidopsis thaliana |
AT4G39280:CDS:10.1 | 77 | Chr4: 18283028-18283104 | Arabidopsis thaliana |
AT4G39280:CDS:9.1 | 39 | Chr4: 18283228-18283266 | Arabidopsis thaliana |
AT4G39280:CDS:8.1 | 38 | Chr4: 18283351-18283388 | Arabidopsis thaliana |
AT4G39280:CDS:7.1 | 85 | Chr4: 18283496-18283580 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39280:exon:20 | 245 | Chr4: 18280098-18280342 | Arabidopsis thaliana |
AT4G39280:exon:2 | 246 | Chr4: 18284685-18284930 | Arabidopsis thaliana |
AT4G39280:exon:19 | 274 | Chr4: 18281418-18281691 | Arabidopsis thaliana |
AT4G39280:exon:18 | 55 | Chr4: 18281792-18281846 | Arabidopsis thaliana |
AT4G39280:exon:17 | 126 | Chr4: 18281920-18282045 | Arabidopsis thaliana |
AT4G39280:exon:16 | 67 | Chr4: 18282128-18282194 | Arabidopsis thaliana |
AT4G39280:exon:15 | 72 | Chr4: 18282281-18282352 | Arabidopsis thaliana |
AT4G39280:exon:14 | 97 | Chr4: 18282463-18282559 | Arabidopsis thaliana |
AT4G39280:exon:13 | 97 | Chr4: 18282643-18282739 | Arabidopsis thaliana |
AT4G39280:exon:12 | 85 | Chr4: 18282822-18282906 | Arabidopsis thaliana |
AT4G39280:exon:11 | 77 | Chr4: 18283028-18283104 | Arabidopsis thaliana |
AT4G39280:exon:10 | 39 | Chr4: 18283228-18283266 | Arabidopsis thaliana |
AT4G39280:exon:9 | 38 | Chr4: 18283351-18283388 | Arabidopsis thaliana |
AT4G39280:exon:8 | 85 | Chr4: 18283496-18283580 | Arabidopsis thaliana |
AT4G39280:exon:7 | 93 | Chr4: 18283671-18283763 | Arabidopsis thaliana |
AT4G39280:exon:6 | 56 | Chr4: 18283847-18283902 | Arabidopsis thaliana |
AT4G39280:exon:5 | 57 | Chr4: 18283997-18284053 | Arabidopsis thaliana |
AT4G39280:exon:4 | 90 | Chr4: 18284170-18284259 | Arabidopsis thaliana |
AT4G39280:exon:3 | 126 | Chr4: 18284353-18284478 | Arabidopsis thaliana |
AT4G39280:exon:1 | 247 | Chr4: 18284685-18284931 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39280:five_prime_UTR:2 | 99 | Chr4: 18284832-18284930 | Arabidopsis thaliana |
AT4G39280:five_prime_UTR:1 | 100 | Chr4: 18284832-18284931 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G39280.2 | 1751 | Chr4: 18280098-18284930 |
AT4G39280.1 | 1781 | Chr4: 18281418-18284931 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G39280:three_prime_UTR:2 | 194 | Chr4: 18280098-18280291 | Arabidopsis thaliana |
AT4G39280:three_prime_UTR:1 | 223 | Chr4: 18281418-18281640 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
A0A178V5N5_ARATH SYFA_ARATH | similarity | Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 2 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
plasma membrane | ECO |
molecular function | |
ATP binding | ECO |
phenylalanine-tRNA ligase activity | ECO |
magnesium ion binding | ECO |
tRNA binding | ECO |
biological process | |
phenylalanyl-tRNA aminoacylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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