Lists
This Gene is in one list:
External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24230:CDS:4 | 123 | Chr4: 12567240-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:CDS:6 | 17 | Chr4: 12567122-12567138 | Arabidopsis thaliana |
AT4G24230:CDS:3 | 112 | Chr4: 12567251-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2.1 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1.1 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:CDS:4.1 | 123 | Chr4: 12567240-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2.2 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1.2 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:CDS:5 | 23 | Chr4: 12567122-12567144 | Arabidopsis thaliana |
AT4G24230:CDS:3.1 | 112 | Chr4: 12567251-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2.3 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1.3 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:CDS:4.2 | 123 | Chr4: 12567240-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2.4 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1.4 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:CDS:4.3 | 123 | Chr4: 12567240-12567362 | Arabidopsis thaliana |
AT4G24230:CDS:2.5 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:CDS:1.5 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24220:exon:2 | 1409 | Chr4: 12565347-12566755 | Arabidopsis thaliana |
AT4G24220:exon:3 | 1406 | Chr4: 12565350-12566755 | Arabidopsis thaliana |
AT4G24230:exon:14 | 514 | Chr4: 12566631-12567144 | Arabidopsis thaliana |
AT4G24230:exon:2 | 952 | Chr4: 12567895-12568846 | Arabidopsis thaliana |
AT4G24230:exon:15 | 508 | Chr4: 12566631-12567138 | Arabidopsis thaliana |
AT4G24230:exon:1 | 972 | Chr4: 12567895-12568866 | Arabidopsis thaliana |
AT4G24230:exon:13 | 265 | Chr4: 12566861-12567125 | Arabidopsis thaliana |
AT4G24230:exon:3 | 876 | Chr4: 12567895-12568770 | Arabidopsis thaliana |
AT4G24230:exon:12 | 210 | Chr4: 12566935-12567144 | Arabidopsis thaliana |
AT4G24230:exon:8 | 112 | Chr4: 12567251-12567362 | Arabidopsis thaliana |
AT4G24230:exon:6 | 860 | Chr4: 12567895-12568754 | Arabidopsis thaliana |
AT4G24230:exon:11 | 189 | Chr4: 12566944-12567132 | Arabidopsis thaliana |
AT4G24230:exon:9 | 125 | Chr4: 12567238-12567362 | Arabidopsis thaliana |
AT4G24230:exon:5 | 873 | Chr4: 12567895-12568767 | Arabidopsis thaliana |
AT4G24230:exon:10 | 283 | Chr4: 12567080-12567362 | Arabidopsis thaliana |
AT4G24230:exon:7 | 106 | Chr4: 12567455-12567560 | Arabidopsis thaliana |
AT4G24230:exon:4 | 874 | Chr4: 12567895-12568768 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24230:five_prime_UTR:2 | 92 | Chr4: 12568755-12568846 | Arabidopsis thaliana |
AT4G24230:five_prime_UTR:1 | 112 | Chr4: 12568755-12568866 | Arabidopsis thaliana |
AT4G24230:five_prime_UTR:3 | 16 | Chr4: 12568755-12568770 | Arabidopsis thaliana |
AT4G24230:five_prime_UTR:5 | 13 | Chr4: 12568755-12568767 | Arabidopsis thaliana |
AT4G24230:five_prime_UTR:4 | 14 | Chr4: 12568755-12568768 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT4G24220 | locus:2135932 | VEP1 | VEIN PATTERNING 1 | 1811 | Chr4: 12564945-12566755 | A. thaliana | NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) | encodes a progesterone-5beta-reductase-like protein. It has enone reductase activity against a wide range of substrates, including 3-oxo-Δ-4,5-steroids in vitro. The in vivo substrates and product of this enzyme have not yet been elucidated but it is likely to participate in steroid metabolism. The protein contains a mammalian death domain involved in programmed cell death. The gene is expressed in the vascular system and mutants carrying a dominant mutation in the gene have defective vascular patterning. VEP1 gene expression is induced specifically by wounding. | NAD(P)-binding Rossmann-fold superfamily protein | 5[beta]-StR, AWI31, VEP1 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G24220.1 | 1722 | Chr4: 12564945-12566755 |
AT4G24220.2 | 1719 | Chr4: 12564945-12566755 |
AT4G24230.2 | 1697 | Chr4: 12566631-12568846 |
AT4G24230.1 | 1698 | Chr4: 12566631-12568866 |
AT4G24230.3 | 1372 | Chr4: 12566861-12568770 |
AT4G24230.6 | 1288 | Chr4: 12566935-12568754 |
AT4G24230.4 | 1293 | Chr4: 12566944-12568767 |
AT4G24230.5 | 1263 | Chr4: 12567080-12568768 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G24220:three_prime_UTR:1 | 281 | Chr4: 12566475-12566755 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:6 | 514 | Chr4: 12566631-12567144 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:7 | 491 | Chr4: 12566631-12567121 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:5 | 265 | Chr4: 12566861-12567125 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:4 | 187 | Chr4: 12566935-12567121 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:3 | 189 | Chr4: 12566944-12567132 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:1 | 2 | Chr4: 12567238-12567239 | Arabidopsis thaliana |
AT4G24230:three_prime_UTR:2 | 160 | Chr4: 12567080-12567239 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
ACBP3_ARATH ACBP3_ARATH-2 | function | Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA. |
ACBP3_ARATH A0A178V431_ARATH ACBP3_ARATH-2 B3H4G6_ARATH | similarity | Belongs to the ACBP family. |
ACBP3_ARATH ACBP3_ARATH-2 | tissue specificity | Expressed in roots, stems, leaves, flowers and siliques. |
Function
Gene Ontology
cellular component | |
---|---|
extracellular space | ECO |
molecular function | |
fatty-acyl-CoA binding | ECO |
biological process | |
fatty acid metabolic process | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...