External Links
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- ATTED-II
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20310:CDS:5 | 135 | Chr4: 10962251-10962385 | Arabidopsis thaliana |
AT4G20310:CDS:7 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:CDS:8 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:CDS:10 | 300 | Chr4: 10963133-10963432 | Arabidopsis thaliana |
AT4G20310:CDS:13 | 177 | Chr4: 10963514-10963690 | Arabidopsis thaliana |
AT4G20310:CDS:1 | 312 | Chr4: 10961639-10961950 | Arabidopsis thaliana |
AT4G20310:CDS:2 | 92 | Chr4: 10962021-10962112 | Arabidopsis thaliana |
AT4G20310:CDS:4 | 148 | Chr4: 10962238-10962385 | Arabidopsis thaliana |
AT4G20310:CDS:7.1 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:CDS:8.1 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:CDS:10.1 | 300 | Chr4: 10963133-10963432 | Arabidopsis thaliana |
AT4G20310:CDS:13.1 | 177 | Chr4: 10963514-10963690 | Arabidopsis thaliana |
AT4G20310:CDS:5.1 | 135 | Chr4: 10962251-10962385 | Arabidopsis thaliana |
AT4G20310:CDS:7.2 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:CDS:8.2 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:CDS:10.2 | 300 | Chr4: 10963133-10963432 | Arabidopsis thaliana |
AT4G20310:CDS:13.2 | 177 | Chr4: 10963514-10963690 | Arabidopsis thaliana |
AT4G20310:CDS:1.1 | 312 | Chr4: 10961639-10961950 | Arabidopsis thaliana |
AT4G20310:CDS:2.1 | 92 | Chr4: 10962021-10962112 | Arabidopsis thaliana |
AT4G20310:CDS:4.1 | 148 | Chr4: 10962238-10962385 | Arabidopsis thaliana |
AT4G20310:CDS:7.3 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:CDS:8.3 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:CDS:11 | 381 | Chr4: 10963133-10963513 | Arabidopsis thaliana |
AT4G20310:CDS:3 | 67 | Chr4: 10962046-10962112 | Arabidopsis thaliana |
AT4G20310:CDS:6 | 107 | Chr4: 10962279-10962385 | Arabidopsis thaliana |
AT4G20310:CDS:7.4 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:CDS:8.4 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:CDS:10.3 | 300 | Chr4: 10963133-10963432 | Arabidopsis thaliana |
AT4G20310:CDS:13.3 | 177 | Chr4: 10963514-10963690 | Arabidopsis thaliana |
AT4G20310:CDS:5.2 | 135 | Chr4: 10962251-10962385 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20310:exon:8 | 365 | Chr4: 10962021-10962385 | Arabidopsis thaliana |
AT4G20310:exon:1 | 395 | Chr4: 10961556-10961950 | Arabidopsis thaliana |
AT4G20310:exon:10 | 170 | Chr4: 10962216-10962385 | Arabidopsis thaliana |
AT4G20310:exon:23 | 576 | Chr4: 10963514-10964089 | Arabidopsis thaliana |
AT4G20310:exon:18 | 846 | Chr4: 10963133-10963978 | Arabidopsis thaliana |
AT4G20310:exon:2 | 360 | Chr4: 10961591-10961950 | Arabidopsis thaliana |
AT4G20310:exon:13 | 107 | Chr4: 10962279-10962385 | Arabidopsis thaliana |
AT4G20310:exon:3 | 353 | Chr4: 10961598-10961950 | Arabidopsis thaliana |
AT4G20310:exon:9 | 186 | Chr4: 10962200-10962385 | Arabidopsis thaliana |
AT4G20310:exon:4 | 345 | Chr4: 10961606-10961950 | Arabidopsis thaliana |
AT4G20310:exon:16 | 808 | Chr4: 10962625-10963432 | Arabidopsis thaliana |
AT4G20310:exon:21 | 522 | Chr4: 10963514-10964035 | Arabidopsis thaliana |
AT4G20310:exon:5 | 341 | Chr4: 10961610-10961950 | Arabidopsis thaliana |
AT4G20310:exon:12 | 135 | Chr4: 10962251-10962385 | Arabidopsis thaliana |
AT4G20310:exon:17 | 300 | Chr4: 10963133-10963432 | Arabidopsis thaliana |
AT4G20310:exon:22 | 543 | Chr4: 10963514-10964056 | Arabidopsis thaliana |
AT4G20310:exon:6 | 338 | Chr4: 10961613-10961950 | Arabidopsis thaliana |
AT4G20310:exon:7 | 92 | Chr4: 10962021-10962112 | Arabidopsis thaliana |
AT4G20310:exon:11 | 148 | Chr4: 10962238-10962385 | Arabidopsis thaliana |
AT4G20310:exon:14 | 81 | Chr4: 10962461-10962541 | Arabidopsis thaliana |
AT4G20310:exon:15 | 432 | Chr4: 10962625-10963056 | Arabidopsis thaliana |
AT4G20310:exon:19 | 281 | Chr4: 10963152-10963432 | Arabidopsis thaliana |
AT4G20310:exon:20 | 435 | Chr4: 10963514-10963948 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20310:five_prime_UTR:11 | 230 | Chr4: 10962021-10962250 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:1 | 83 | Chr4: 10961556-10961638 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:2 | 395 | Chr4: 10961556-10961950 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:13 | 35 | Chr4: 10962216-10962250 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:3 | 48 | Chr4: 10961591-10961638 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:4 | 360 | Chr4: 10961591-10961950 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:9 | 25 | Chr4: 10962021-10962045 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:5 | 353 | Chr4: 10961598-10961950 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:12 | 51 | Chr4: 10962200-10962250 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:6 | 33 | Chr4: 10961606-10961638 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:7 | 341 | Chr4: 10961610-10961950 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:10 | 92 | Chr4: 10962021-10962112 | Arabidopsis thaliana |
AT4G20310:five_prime_UTR:8 | 26 | Chr4: 10961613-10961638 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT4G20310.3 | 2149 | Chr4: 10961556-10964089 |
AT4G20310.4 | 2024 | Chr4: 10961556-10964089 |
AT4G20310.2 | 2046 | Chr4: 10961556-10964089 |
AT4G20310.5 | 1959 | Chr4: 10961591-10963978 |
AT4G20310.6 | 1915 | Chr4: 10961591-10964056 |
AT4G20310.7 | 1987 | Chr4: 10961598-10964056 |
AT4G20310.8 | 1996 | Chr4: 10961606-10964035 |
AT4G20310.9 | 1924 | Chr4: 10961610-10964056 |
AT4G20310.1 | 1807 | Chr4: 10961613-10963948 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT4G20310:three_prime_UTR:7 | 399 | Chr4: 10963691-10964089 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:4 | 465 | Chr4: 10963514-10963978 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:1 | 361 | Chr4: 10963072-10963432 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:5 | 522 | Chr4: 10963514-10964035 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:6 | 366 | Chr4: 10963691-10964056 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:2 | 149 | Chr4: 10963284-10963432 | Arabidopsis thaliana |
AT4G20310:three_prime_UTR:3 | 435 | Chr4: 10963514-10963948 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
S2P_ARATH | function | Metalloprotease that catalyzes the second step (site-2 cleavage) in the proteolytic activation of various factors, after site-1 cleavage. Part of a regulated intramembrane proteolysis (RIP) cascade. After ER stress, cleaves BZIP17 and BZIP28 proteins which function as stress sensors and transducers in ER stress signaling pathway. The N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as proteins involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth. |
S2P_ARATH | similarity | Belongs to the peptidase M50A family. |
S2P_ARATH | tissue specificity | Expressed in the vasculature of roots, cotyledons and leaves. |
Function
Gene Ontology
cellular component | |
---|---|
Golgi membrane | ECO |
molecular function | |
metal ion binding | ECO |
metalloendopeptidase activity | ECO |
biological process | |
regulation of brassinosteroid mediated signaling pathway | ECO |
proteolysis | ECO |
response to salt stress | ECO |
cellular hyperosmotic salinity response | ECO |
regulation of response to endoplasmic reticulum stress | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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