External Links
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs: 41, Exons: 22, Five Prime UTRs: 12, Gene: 1, mRNAs: 13, Three Prime UTRs: 8, Transposable Elements: 4, Transposon Fragments: 4
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28956:CDS:8 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:3 | 117 | Chr3: 10981264-10981380 | Arabidopsis thaliana |
AT3G28956:CDS:8.1 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5.1 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:6 | 228 | Chr3: 10980960-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2.1 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1.1 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:7 | 17 | Chr3: 10980916-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:4 | 73 | Chr3: 10981115-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2.2 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1.2 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:8.2 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5.2 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:3.1 | 117 | Chr3: 10981264-10981380 | Arabidopsis thaliana |
AT3G28956:CDS:8.3 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5.3 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2.3 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1.3 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:6.1 | 228 | Chr3: 10980960-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2.4 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1.4 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:8.4 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5.4 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:CDS:2.5 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:CDS:1.5 | 8 | Chr3: 10981462-10981469 | Arabidopsis thaliana |
AT3G28956:CDS:8.5 | 144 | Chr3: 10980789-10980932 | Arabidopsis thaliana |
AT3G28956:CDS:5.5 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28956:exon:20 | 787 | Chr3: 10980401-10981187 | Arabidopsis thaliana |
AT3G28956:exon:21 | 532 | Chr3: 10980401-10980932 | Arabidopsis thaliana |
AT3G28956:exon:13 | 73 | Chr3: 10981115-10981187 | Arabidopsis thaliana |
AT3G28956:exon:1 | 186 | Chr3: 10982572-10982757 | Arabidopsis thaliana |
AT3G28956:exon:19 | 459 | Chr3: 10980474-10980932 | Arabidopsis thaliana |
AT3G28956:exon:2 | 162 | Chr3: 10982572-10982733 | Arabidopsis thaliana |
AT3G28956:exon:18 | 353 | Chr3: 10980580-10980932 | Arabidopsis thaliana |
AT3G28956:exon:17 | 608 | Chr3: 10980580-10981187 | Arabidopsis thaliana |
AT3G28956:exon:4 | 234 | Chr3: 10982187-10982420 | Arabidopsis thaliana |
AT3G28956:exon:10 | 132 | Chr3: 10981462-10981593 | Arabidopsis thaliana |
AT3G28956:exon:8 | 148 | Chr3: 10982038-10982185 | Arabidopsis thaliana |
AT3G28956:exon:16 | 322 | Chr3: 10980611-10980932 | Arabidopsis thaliana |
AT3G28956:exon:11 | 330 | Chr3: 10981264-10981593 | Arabidopsis thaliana |
AT3G28956:exon:6 | 113 | Chr3: 10982187-10982299 | Arabidopsis thaliana |
AT3G28956:exon:5 | 217 | Chr3: 10982187-10982403 | Arabidopsis thaliana |
AT3G28956:exon:15 | 233 | Chr3: 10980700-10980932 | Arabidopsis thaliana |
AT3G28956:exon:14 | 153 | Chr3: 10981035-10981187 | Arabidopsis thaliana |
AT3G28956:exon:12 | 118 | Chr3: 10981264-10981381 | Arabidopsis thaliana |
AT3G28956:exon:9 | 95 | Chr3: 10981499-10981593 | Arabidopsis thaliana |
AT3G28956:exon:7 | 55 | Chr3: 10982187-10982241 | Arabidopsis thaliana |
AT3G28956:exon:3 | 28 | Chr3: 10982572-10982599 | Arabidopsis thaliana |
AT3G28958:exon:1 | 126 | Chr3: 10982706-10982831 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28956:five_prime_UTR:1 | 186 | Chr3: 10982572-10982757 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:2 | 162 | Chr3: 10982572-10982733 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:4 | 234 | Chr3: 10982187-10982420 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:10 | 124 | Chr3: 10981470-10981593 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:8 | 148 | Chr3: 10982038-10982185 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:11 | 213 | Chr3: 10981381-10981593 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:6 | 113 | Chr3: 10982187-10982299 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:5 | 217 | Chr3: 10982187-10982403 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:12 | 1 | Chr3: 10981381-10981381 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:9 | 95 | Chr3: 10981499-10981593 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:7 | 55 | Chr3: 10982187-10982241 | Arabidopsis thaliana |
AT3G28956:five_prime_UTR:3 | 28 | Chr3: 10982572-10982599 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G28958 | locus:504955772 | AT3G28958 | 827 | Chr3: 10982706-10983532 | A. thaliana | Cupredoxin superfamily protein;(source:Araport11) | NULL | Cupredoxin superfamily protein |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G28956.5 | 1044 | Chr3: 10980401-10982757 |
AT3G28956.3 | 1176 | Chr3: 10980401-10982757 |
AT3G28956.2 | 1278 | Chr3: 10980401-10982757 |
AT3G28956.4 | 1096 | Chr3: 10980401-10982757 |
AT3G28956.6 | 1159 | Chr3: 10980474-10982733 |
AT3G28956.8 | 990 | Chr3: 10980580-10982420 |
AT3G28956.7 | 1092 | Chr3: 10980580-10982420 |
AT3G28956.10 | 873 | Chr3: 10980611-10982185 |
AT3G28956.9 | 918 | Chr3: 10980611-10982299 |
AT3G28956.11 | 721 | Chr3: 10980700-10982403 |
AT3G28956.1 | 816 | Chr3: 10980700-10982403 |
AT3G28956.12 | 682 | Chr3: 10980700-10982599 |
AT3G28958.1 | 528 | Chr3: 10982706-10983532 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G28956:three_prime_UTR:8 | 388 | Chr3: 10980401-10980788 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:6 | 559 | Chr3: 10980401-10980959 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:7 | 515 | Chr3: 10980401-10980915 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:5 | 315 | Chr3: 10980474-10980788 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:4 | 209 | Chr3: 10980580-10980788 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:3 | 380 | Chr3: 10980580-10980959 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:2 | 178 | Chr3: 10980611-10980788 | Arabidopsis thaliana |
AT3G28956:three_prime_UTR:1 | 89 | Chr3: 10980700-10980788 | Arabidopsis thaliana |
Transposable Elements
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE45635 | 156 | Chr3: 10980465-10980620 | Arabidopsis thaliana |
AT3TE45640 | 156 | Chr3: 10980649-10980804 | Arabidopsis thaliana |
AT3TE45645 | 212 | Chr3: 10982264-10982475 | Arabidopsis thaliana |
AT3TE45650 | 209 | Chr3: 10982728-10982936 | Arabidopsis thaliana |
Transposon Fragments
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3TE45635:transposon_fragment:1 | 156 | Chr3: 10980465-10980620 | Arabidopsis thaliana |
AT3TE45640:transposon_fragment:1 | 156 | Chr3: 10980649-10980804 | Arabidopsis thaliana |
AT3TE45645:transposon_fragment:1 | 212 | Chr3: 10982264-10982475 | Arabidopsis thaliana |
AT3TE45650:transposon_fragment:1 | 209 | Chr3: 10982728-10982936 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4J1Q7_ARATH A0A1I9LMM7_ARATH A0A1I9LMM6_ARATH | similarity | Belongs to the eukaryotic RPC9 RNA polymerase subunit family. |
Function
Gene Ontology
cellular component | |
---|---|
membrane | ECO |
RNA polymerase III complex | ECO |
molecular function | |
nucleotide binding | ECO |
biological process | |
transcription initiation at RNA polymerase III promoter | ECO |
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...