External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12990:CDS:9 | 96 | Chr3: 4157747-4157842 | Arabidopsis thaliana |
AT3G12990:CDS:9.1 | 96 | Chr3: 4157747-4157842 | Arabidopsis thaliana |
AT3G13000:CDS:13 | 321 | Chr3: 4158214-4158534 | Arabidopsis thaliana |
AT3G13000:CDS:12 | 120 | Chr3: 4158611-4158730 | Arabidopsis thaliana |
AT3G13000:CDS:11 | 93 | Chr3: 4158822-4158914 | Arabidopsis thaliana |
AT3G13000:CDS:10 | 60 | Chr3: 4158999-4159058 | Arabidopsis thaliana |
AT3G13000:CDS:9 | 100 | Chr3: 4159147-4159246 | Arabidopsis thaliana |
AT3G13000:CDS:8 | 485 | Chr3: 4159332-4159816 | Arabidopsis thaliana |
AT3G13000:CDS:7 | 141 | Chr3: 4159937-4160077 | Arabidopsis thaliana |
AT3G13000:CDS:6 | 150 | Chr3: 4160216-4160365 | Arabidopsis thaliana |
AT3G13000:CDS:5 | 114 | Chr3: 4160449-4160562 | Arabidopsis thaliana |
AT3G13000:CDS:4 | 69 | Chr3: 4160648-4160716 | Arabidopsis thaliana |
AT3G13000:CDS:2 | 67 | Chr3: 4160810-4160876 | Arabidopsis thaliana |
AT3G13000:CDS:1 | 29 | Chr3: 4160961-4160989 | Arabidopsis thaliana |
AT3G13000:CDS:13.1 | 321 | Chr3: 4158214-4158534 | Arabidopsis thaliana |
AT3G13000:CDS:12.1 | 120 | Chr3: 4158611-4158730 | Arabidopsis thaliana |
AT3G13000:CDS:11.1 | 93 | Chr3: 4158822-4158914 | Arabidopsis thaliana |
AT3G13000:CDS:10.1 | 60 | Chr3: 4158999-4159058 | Arabidopsis thaliana |
AT3G13000:CDS:9.1 | 100 | Chr3: 4159147-4159246 | Arabidopsis thaliana |
AT3G13000:CDS:8.1 | 485 | Chr3: 4159332-4159816 | Arabidopsis thaliana |
AT3G13000:CDS:7.1 | 141 | Chr3: 4159937-4160077 | Arabidopsis thaliana |
AT3G13000:CDS:6.1 | 150 | Chr3: 4160216-4160365 | Arabidopsis thaliana |
AT3G13000:CDS:5.1 | 114 | Chr3: 4160449-4160562 | Arabidopsis thaliana |
AT3G13000:CDS:4.1 | 69 | Chr3: 4160648-4160716 | Arabidopsis thaliana |
AT3G13000:CDS:2.1 | 67 | Chr3: 4160810-4160876 | Arabidopsis thaliana |
AT3G13000:CDS:1.1 | 29 | Chr3: 4160961-4160989 | Arabidopsis thaliana |
AT3G13000:CDS:13.2 | 321 | Chr3: 4158214-4158534 | Arabidopsis thaliana |
AT3G13000:CDS:12.2 | 120 | Chr3: 4158611-4158730 | Arabidopsis thaliana |
AT3G13000:CDS:11.2 | 93 | Chr3: 4158822-4158914 | Arabidopsis thaliana |
AT3G13000:CDS:10.2 | 60 | Chr3: 4158999-4159058 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12990:exon:12 | 218 | Chr3: 4157747-4157964 | Arabidopsis thaliana |
AT3G12990:exon:13 | 255 | Chr3: 4157747-4158001 | Arabidopsis thaliana |
AT3G12990:exon:11 | 537 | Chr3: 4157465-4158001 | Arabidopsis thaliana |
AT3G12990:exon:14 | 258 | Chr3: 4157747-4158004 | Arabidopsis thaliana |
AT3G13000:exon:17 | 822 | Chr3: 4157713-4158534 | Arabidopsis thaliana |
AT3G13000:exon:4 | 136 | Chr3: 4160961-4161096 | Arabidopsis thaliana |
AT3G13000:exon:1 | 259 | Chr3: 4161807-4162065 | Arabidopsis thaliana |
AT3G13000:exon:6 | 67 | Chr3: 4160810-4160876 | Arabidopsis thaliana |
AT3G13000:exon:3 | 652 | Chr3: 4160961-4161612 | Arabidopsis thaliana |
AT3G13000:exon:16 | 569 | Chr3: 4157966-4158534 | Arabidopsis thaliana |
AT3G13000:exon:15 | 120 | Chr3: 4158611-4158730 | Arabidopsis thaliana |
AT3G13000:exon:14 | 93 | Chr3: 4158822-4158914 | Arabidopsis thaliana |
AT3G13000:exon:13 | 60 | Chr3: 4158999-4159058 | Arabidopsis thaliana |
AT3G13000:exon:12 | 100 | Chr3: 4159147-4159246 | Arabidopsis thaliana |
AT3G13000:exon:11 | 485 | Chr3: 4159332-4159816 | Arabidopsis thaliana |
AT3G13000:exon:10 | 141 | Chr3: 4159937-4160077 | Arabidopsis thaliana |
AT3G13000:exon:9 | 150 | Chr3: 4160216-4160365 | Arabidopsis thaliana |
AT3G13000:exon:8 | 114 | Chr3: 4160449-4160562 | Arabidopsis thaliana |
AT3G13000:exon:7 | 69 | Chr3: 4160648-4160716 | Arabidopsis thaliana |
AT3G13000:exon:5 | 287 | Chr3: 4160810-4161096 | Arabidopsis thaliana |
AT3G13000:exon:2 | 258 | Chr3: 4161807-4162064 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G13000:five_prime_UTR:4 | 107 | Chr3: 4160990-4161096 | Arabidopsis thaliana |
AT3G13000:five_prime_UTR:1 | 259 | Chr3: 4161807-4162065 | Arabidopsis thaliana |
AT3G13000:five_prime_UTR:3 | 623 | Chr3: 4160990-4161612 | Arabidopsis thaliana |
AT3G13000:five_prime_UTR:5 | 278 | Chr3: 4160819-4161096 | Arabidopsis thaliana |
AT3G13000:five_prime_UTR:2 | 258 | Chr3: 4161807-4162064 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT3G12990 | locus:2089215 | RRP45a | ribonuclease PH45A | 1951 | Chr3: 4156054-4158004 | A. thaliana | ribonuclease PH45A;(source:Araport11) | Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis. | ribonuclease PH45A | RRP45a |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT3G12990.3 | 1213 | Chr3: 4156054-4157964 |
AT3G12990.2 | 1264 | Chr3: 4156130-4158001 |
AT3G12990.4 | 1267 | Chr3: 4156130-4158001 |
AT3G12990.1 | 1233 | Chr3: 4156198-4158004 |
AT3G13000.2 | 2616 | Chr3: 4157713-4162065 |
AT3G13000.3 | 2620 | Chr3: 4157966-4161612 |
AT3G13000.1 | 2446 | Chr3: 4157966-4162064 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT3G12990:three_prime_UTR:4 | 122 | Chr3: 4157843-4157964 | Arabidopsis thaliana |
AT3G12990:three_prime_UTR:3 | 255 | Chr3: 4157747-4158001 | Arabidopsis thaliana |
AT3G12990:three_prime_UTR:2 | 312 | Chr3: 4157690-4158001 | Arabidopsis thaliana |
AT3G12990:three_prime_UTR:5 | 162 | Chr3: 4157843-4158004 | Arabidopsis thaliana |
AT3G13000:three_prime_UTR:2 | 501 | Chr3: 4157713-4158213 | Arabidopsis thaliana |
AT3G13000:three_prime_UTR:1 | 248 | Chr3: 4157966-4158213 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole | ECO |
molecular function | |
DNA-binding transcription factor activity | ECO |
biological process | |
regulation of DNA-templated transcription | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...