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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G36810:CDS:53 | 180 | Chr2: 15425739-15425918 | Arabidopsis thaliana |
AT2G36810:CDS:52 | 108 | Chr2: 15425990-15426097 | Arabidopsis thaliana |
AT2G36810:CDS:51 | 91 | Chr2: 15426188-15426278 | Arabidopsis thaliana |
AT2G36810:CDS:50 | 86 | Chr2: 15426361-15426446 | Arabidopsis thaliana |
AT2G36810:CDS:49 | 72 | Chr2: 15426527-15426598 | Arabidopsis thaliana |
AT2G36810:CDS:48 | 99 | Chr2: 15426693-15426791 | Arabidopsis thaliana |
AT2G36810:CDS:47 | 75 | Chr2: 15426987-15427061 | Arabidopsis thaliana |
AT2G36810:CDS:46 | 114 | Chr2: 15427168-15427281 | Arabidopsis thaliana |
AT2G36810:CDS:45 | 106 | Chr2: 15427699-15427804 | Arabidopsis thaliana |
AT2G36810:CDS:44 | 101 | Chr2: 15428128-15428228 | Arabidopsis thaliana |
AT2G36810:CDS:43 | 96 | Chr2: 15428528-15428623 | Arabidopsis thaliana |
AT2G36810:CDS:42 | 61 | Chr2: 15428700-15428760 | Arabidopsis thaliana |
AT2G36810:CDS:41 | 123 | Chr2: 15428853-15428975 | Arabidopsis thaliana |
AT2G36810:CDS:40 | 182 | Chr2: 15429052-15429233 | Arabidopsis thaliana |
AT2G36810:CDS:39 | 132 | Chr2: 15429421-15429552 | Arabidopsis thaliana |
AT2G36810:CDS:38 | 73 | Chr2: 15429671-15429743 | Arabidopsis thaliana |
AT2G36810:CDS:37 | 134 | Chr2: 15429841-15429974 | Arabidopsis thaliana |
AT2G36810:CDS:36 | 75 | Chr2: 15430056-15430130 | Arabidopsis thaliana |
AT2G36810:CDS:35 | 126 | Chr2: 15430222-15430347 | Arabidopsis thaliana |
AT2G36810:CDS:34 | 110 | Chr2: 15430462-15430571 | Arabidopsis thaliana |
AT2G36810:CDS:33 | 239 | Chr2: 15430662-15430900 | Arabidopsis thaliana |
AT2G36810:CDS:32 | 101 | Chr2: 15431325-15431425 | Arabidopsis thaliana |
AT2G36810:CDS:31 | 81 | Chr2: 15431532-15431612 | Arabidopsis thaliana |
AT2G36810:CDS:30 | 146 | Chr2: 15431701-15431846 | Arabidopsis thaliana |
AT2G36810:CDS:29 | 82 | Chr2: 15432013-15432094 | Arabidopsis thaliana |
AT2G36810:CDS:28 | 136 | Chr2: 15432389-15432524 | Arabidopsis thaliana |
AT2G36810:CDS:27 | 80 | Chr2: 15432918-15432997 | Arabidopsis thaliana |
AT2G36810:CDS:26 | 130 | Chr2: 15433077-15433206 | Arabidopsis thaliana |
AT2G36810:CDS:25 | 122 | Chr2: 15433679-15433800 | Arabidopsis thaliana |
AT2G36810:CDS:24 | 90 | Chr2: 15433919-15434008 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G36810:exon:56 | 598 | Chr2: 15425321-15425918 | Arabidopsis thaliana |
AT2G36810:exon:1 | 220 | Chr2: 15439423-15439642 | Arabidopsis thaliana |
AT2G36810:exon:55 | 452 | Chr2: 15425467-15425918 | Arabidopsis thaliana |
AT2G36810:exon:21 | 66 | Chr2: 15434694-15434759 | Arabidopsis thaliana |
AT2G36810:exon:9 | 119 | Chr2: 15437416-15437534 | Arabidopsis thaliana |
AT2G36810:exon:54 | 440 | Chr2: 15425479-15425918 | Arabidopsis thaliana |
AT2G36810:exon:53 | 108 | Chr2: 15425990-15426097 | Arabidopsis thaliana |
AT2G36810:exon:52 | 91 | Chr2: 15426188-15426278 | Arabidopsis thaliana |
AT2G36810:exon:51 | 86 | Chr2: 15426361-15426446 | Arabidopsis thaliana |
AT2G36810:exon:50 | 72 | Chr2: 15426527-15426598 | Arabidopsis thaliana |
AT2G36810:exon:49 | 99 | Chr2: 15426693-15426791 | Arabidopsis thaliana |
AT2G36810:exon:48 | 75 | Chr2: 15426987-15427061 | Arabidopsis thaliana |
AT2G36810:exon:47 | 114 | Chr2: 15427168-15427281 | Arabidopsis thaliana |
AT2G36810:exon:46 | 106 | Chr2: 15427699-15427804 | Arabidopsis thaliana |
AT2G36810:exon:45 | 101 | Chr2: 15428128-15428228 | Arabidopsis thaliana |
AT2G36810:exon:44 | 96 | Chr2: 15428528-15428623 | Arabidopsis thaliana |
AT2G36810:exon:43 | 61 | Chr2: 15428700-15428760 | Arabidopsis thaliana |
AT2G36810:exon:42 | 123 | Chr2: 15428853-15428975 | Arabidopsis thaliana |
AT2G36810:exon:41 | 182 | Chr2: 15429052-15429233 | Arabidopsis thaliana |
AT2G36810:exon:40 | 132 | Chr2: 15429421-15429552 | Arabidopsis thaliana |
AT2G36810:exon:39 | 73 | Chr2: 15429671-15429743 | Arabidopsis thaliana |
AT2G36810:exon:38 | 134 | Chr2: 15429841-15429974 | Arabidopsis thaliana |
AT2G36810:exon:37 | 75 | Chr2: 15430056-15430130 | Arabidopsis thaliana |
AT2G36810:exon:36 | 126 | Chr2: 15430222-15430347 | Arabidopsis thaliana |
AT2G36810:exon:35 | 110 | Chr2: 15430462-15430571 | Arabidopsis thaliana |
AT2G36810:exon:34 | 239 | Chr2: 15430662-15430900 | Arabidopsis thaliana |
AT2G36810:exon:33 | 101 | Chr2: 15431325-15431425 | Arabidopsis thaliana |
AT2G36810:exon:32 | 81 | Chr2: 15431532-15431612 | Arabidopsis thaliana |
AT2G36810:exon:31 | 146 | Chr2: 15431701-15431846 | Arabidopsis thaliana |
AT2G36810:exon:30 | 82 | Chr2: 15432013-15432094 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G36810:five_prime_UTR:1 | 180 | Chr2: 15439463-15439642 | Arabidopsis thaliana |
AT2G36810:five_prime_UTR:2 | 117 | Chr2: 15437418-15437534 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT2G36810.2 | 5710 | Chr2: 15425321-15439642 |
AT2G36810.3 | 4847 | Chr2: 15425467-15437534 |
AT2G36810.1 | 5411 | Chr2: 15425479-15439462 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT2G36810:three_prime_UTR:3 | 418 | Chr2: 15425321-15425738 | Arabidopsis thaliana |
AT2G36810:three_prime_UTR:2 | 272 | Chr2: 15425467-15425738 | Arabidopsis thaliana |
AT2G36810:three_prime_UTR:1 | 260 | Chr2: 15425479-15425738 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SHGR6_ARATH | function | Involved in inflorescence stems gravitropism, by modulating vacuolar membrane (VMs) dynamics in gravity-sensing cells (e.g. endodermal cells) during the amyloplast sedimentation process. |
SHGR6_ARATH | tissue specificity | Expressed in roots (e.g. root cap of primary roots and vascular tissues), hypocotyls, cotyledons (including in guard cells), stems (e.g. epidermis, endodermis, phloem, developing metaxylem and interfascicular cells). |
Function
Gene Ontology
cellular component | |
---|---|
plant-type vacuole membrane | ECO |
molecular function | |
No terms in this category. | |
biological process | |
negative gravitropism | ECO |
amyloplast organization | ECO |
gravitropism | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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