Lists
This Gene is in one list:
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80420:CDS:8 | 285 | Chr1: 30235444-30235728 | Arabidopsis thaliana |
AT1G80420:CDS:7 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
AT1G80420:CDS:6 | 114 | Chr1: 30236022-30236135 | Arabidopsis thaliana |
AT1G80420:CDS:4 | 50 | Chr1: 30236339-30236388 | Arabidopsis thaliana |
AT1G80420:CDS:3 | 112 | Chr1: 30236484-30236595 | Arabidopsis thaliana |
AT1G80420:CDS:2 | 189 | Chr1: 30236686-30236874 | Arabidopsis thaliana |
AT1G80420:CDS:1 | 189 | Chr1: 30236975-30237163 | Arabidopsis thaliana |
AT1G80420:CDS:8.1 | 285 | Chr1: 30235444-30235728 | Arabidopsis thaliana |
AT1G80420:CDS:7.1 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
AT1G80420:CDS:6.1 | 114 | Chr1: 30236022-30236135 | Arabidopsis thaliana |
AT1G80420:CDS:5 | 86 | Chr1: 30236228-30236313 | Arabidopsis thaliana |
AT1G80420:CDS:3.1 | 112 | Chr1: 30236484-30236595 | Arabidopsis thaliana |
AT1G80420:CDS:2.1 | 189 | Chr1: 30236686-30236874 | Arabidopsis thaliana |
AT1G80420:CDS:1.1 | 189 | Chr1: 30236975-30237163 | Arabidopsis thaliana |
AT1G80420:CDS:8.2 | 285 | Chr1: 30235444-30235728 | Arabidopsis thaliana |
AT1G80420:CDS:7.2 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
AT1G80420:CDS:6.2 | 114 | Chr1: 30236022-30236135 | Arabidopsis thaliana |
AT1G80420:CDS:5.1 | 86 | Chr1: 30236228-30236313 | Arabidopsis thaliana |
AT1G80420:CDS:3.2 | 112 | Chr1: 30236484-30236595 | Arabidopsis thaliana |
AT1G80420:CDS:2.2 | 189 | Chr1: 30236686-30236874 | Arabidopsis thaliana |
AT1G80420:CDS:1.2 | 189 | Chr1: 30236975-30237163 | Arabidopsis thaliana |
AT1G80420:CDS:8.3 | 285 | Chr1: 30235444-30235728 | Arabidopsis thaliana |
AT1G80420:CDS:7.3 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
AT1G80420:CDS:6.3 | 114 | Chr1: 30236022-30236135 | Arabidopsis thaliana |
AT1G80420:CDS:5.2 | 86 | Chr1: 30236228-30236313 | Arabidopsis thaliana |
AT1G80420:CDS:3.3 | 112 | Chr1: 30236484-30236595 | Arabidopsis thaliana |
AT1G80420:CDS:2.3 | 189 | Chr1: 30236686-30236874 | Arabidopsis thaliana |
AT1G80420:CDS:1.3 | 189 | Chr1: 30236975-30237163 | Arabidopsis thaliana |
AT1G80420:CDS:8.4 | 285 | Chr1: 30235444-30235728 | Arabidopsis thaliana |
AT1G80420:CDS:7.4 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80420:exon:18 | 565 | Chr1: 30235164-30235728 | Arabidopsis thaliana |
AT1G80420:exon:12 | 50 | Chr1: 30236339-30236388 | Arabidopsis thaliana |
AT1G80420:exon:7 | 383 | Chr1: 30236975-30237357 | Arabidopsis thaliana |
AT1G80420:exon:5 | 274 | Chr1: 30237498-30237771 | Arabidopsis thaliana |
AT1G80420:exon:8 | 345 | Chr1: 30236975-30237319 | Arabidopsis thaliana |
AT1G80420:exon:3 | 68 | Chr1: 30237649-30237716 | Arabidopsis thaliana |
AT1G80420:exon:17 | 540 | Chr1: 30235189-30235728 | Arabidopsis thaliana |
AT1G80420:exon:2 | 80 | Chr1: 30237649-30237728 | Arabidopsis thaliana |
AT1G80420:exon:6 | 782 | Chr1: 30236975-30237756 | Arabidopsis thaliana |
AT1G80420:exon:16 | 509 | Chr1: 30235220-30235728 | Arabidopsis thaliana |
AT1G80420:exon:15 | 87 | Chr1: 30235856-30235942 | Arabidopsis thaliana |
AT1G80420:exon:14 | 114 | Chr1: 30236022-30236135 | Arabidopsis thaliana |
AT1G80420:exon:13 | 86 | Chr1: 30236228-30236313 | Arabidopsis thaliana |
AT1G80420:exon:11 | 112 | Chr1: 30236484-30236595 | Arabidopsis thaliana |
AT1G80420:exon:10 | 189 | Chr1: 30236686-30236874 | Arabidopsis thaliana |
AT1G80420:exon:9 | 231 | Chr1: 30236975-30237205 | Arabidopsis thaliana |
AT1G80420:exon:4 | 54 | Chr1: 30237649-30237702 | Arabidopsis thaliana |
AT1G80420:exon:1 | 77 | Chr1: 30238459-30238535 | Arabidopsis thaliana |
AT1G80430:exon:1 | 82 | Chr1: 30237784-30237865 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80420:five_prime_UTR:7 | 194 | Chr1: 30237164-30237357 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:5 | 274 | Chr1: 30237498-30237771 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:8 | 156 | Chr1: 30237164-30237319 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:3 | 68 | Chr1: 30237649-30237716 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:2 | 80 | Chr1: 30237649-30237728 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:6 | 593 | Chr1: 30237164-30237756 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:9 | 42 | Chr1: 30237164-30237205 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:4 | 54 | Chr1: 30237649-30237702 | Arabidopsis thaliana |
AT1G80420:five_prime_UTR:1 | 77 | Chr1: 30238459-30238535 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G80430 | locus:3690987 | AT1G80430 | 82 | Chr1: 30237784-30237865 | A. thaliana | pre-tRNA tRNA-Ser (anticodon: AGA);(source:Araport11, TAIR10) | NULL | pre-tRNA |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G80420.4 | 1774 | Chr1: 30235164-30237771 |
AT1G80420.1 | 1541 | Chr1: 30235189-30237716 |
AT1G80420.3 | 1439 | Chr1: 30235189-30237728 |
AT1G80420.5 | 1879 | Chr1: 30235220-30237756 |
AT1G80420.2 | 1459 | Chr1: 30235220-30238535 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G80420:three_prime_UTR:3 | 280 | Chr1: 30235164-30235443 | Arabidopsis thaliana |
AT1G80420:three_prime_UTR:2 | 255 | Chr1: 30235189-30235443 | Arabidopsis thaliana |
AT1G80420:three_prime_UTR:1 | 224 | Chr1: 30235220-30235443 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
XRCC1_ARATH-2 XRCC1_ARATH | function | Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents (By similarity). Involved in DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation. |
XRCC1_ARATH-2 XRCC1_ARATH | subcellular location | Accumulates at sites of DNA damage. |
Function
Gene Ontology
cellular component | |
---|---|
nucleus | ECO |
molecular function | |
damaged DNA binding | ECO |
double-stranded methylated DNA binding | ECO |
biological process | |
DNA ligation | ECO |
single strand break repair | ECO |
base-excision repair | ECO |
double-strand break repair via nonhomologous end joining | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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