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Gene : ATXRCC1 A. thaliana

DB identifier  ? AT1G80420 Secondary Identifier  ? locus:2198973
Brief Description  BRCT domain-containing DNA repair protein
TAIR Computational Description  BRCT domain-containing DNA repair protein;(source:Araport11)
TAIR Curator Summary  Encodes a component of plant break excision repair and functions at several stages during active DNA demethylation in Arabidopsis.
TAIR Short Description  BRCT domain-containing DNA repair protein
TAIR Aliases  ATXRCC1, XRCC1

2 Gene Rifs

1 Organism

11 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3372  
Location: Chr1:30235164-30238535 reverse strand

Gene models - ATXRCC1 AT1G80420

? Gene models

Transcripts: 5  Exons: 40  Introns: 35 

Overlapping Features

? Genome features that overlap coordinates of this Gene

CDSs: 35, Exons: 19, Five Prime UTRs: 9, Gene: 1, mRNAs: 5, tRNA: 1, Three Prime UTRs: 3

23 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
XRCC1_ARATH-2 XRCC1_ARATH function Corrects defective DNA strand-break repair and sister chromatid exchange following treatment with ionizing radiation and alkylating agents (By similarity). Involved in DNA demethylation pathway by stimulating cytosine methylation (5-meC) excision, gap tailoring, and DNA ligation.
XRCC1_ARATH-2 XRCC1_ARATH subcellular location Accumulates at sites of DNA damage.

2 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
damaged DNA binding  ? ECO  
double-stranded methylated DNA binding  ? ECO  
biological process
DNA ligation  ? ECO  
single strand break repair  ? ECO  
base-excision repair  ? ECO  
double-strand break repair via nonhomologous end joining  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

8 Data Sets