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Genomics
Genome feature
| Region: |
gene
|
Length: |
3467
 |
| Location: | Chr1:30194605-30198071 reverse strand | ||
| Transcript | Exons | Introns | ||||||
|---|---|---|---|---|---|---|---|---|
|
AT1G80325.1
AT1G80325.1
3317 |
|
|
||||||
|
AT1G80325.2
AT1G80325.2
3299 |
|
|
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 2, CDSs: 6, Exons: 11, Five Prime UTR: 1, Genes: 5, mRNAs: 5, Three Prime UTRs: 3
Antisense lncRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT1G80325.1 |
3317
|
Chr1: 30194605-30198033 |
| AT1G80325.2 |
3299
|
Chr1: 30194696-30198071 |
CDSs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G80310:CDS:1 |
1395
|
Chr1: 30194951-30196345 | Arabidopsis thaliana |
| AT1G80315:CDS:1 |
309
|
Chr1: 30195424-30195732 | Arabidopsis thaliana |
| AT1G80320:CDS:1 |
377
|
Chr1: 30196782-30197158 | Arabidopsis thaliana |
| AT1G80320:CDS:2 |
328
|
Chr1: 30197232-30197559 | Arabidopsis thaliana |
| AT1G80320:CDS:3 |
258
|
Chr1: 30197639-30197896 | Arabidopsis thaliana |
| AT1G80330:CDS:2 |
598
|
Chr1: 30198061-30198658 | Arabidopsis thaliana |
Exons
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G80300:exon:5 |
664
|
Chr1: 30193942-30194605 | Arabidopsis thaliana |
| AT1G80325:exon:4 |
1851
|
Chr1: 30194605-30196455 | Arabidopsis thaliana |
| AT1G80325:exon:2 |
1466
|
Chr1: 30196568-30198033 | Arabidopsis thaliana |
| AT1G80325:exon:3 |
2899
|
Chr1: 30194696-30197594 | Arabidopsis thaliana |
| AT1G80325:exon:1 |
400
|
Chr1: 30197672-30198071 | Arabidopsis thaliana |
| AT1G80310:exon:1 |
1937
|
Chr1: 30194618-30196554 | Arabidopsis thaliana |
| AT1G80315:exon:1 |
1035
|
Chr1: 30194698-30195732 | Arabidopsis thaliana |
| AT1G80320:exon:1 |
377
|
Chr1: 30196782-30197158 | Arabidopsis thaliana |
| AT1G80320:exon:2 |
328
|
Chr1: 30197232-30197559 | Arabidopsis thaliana |
| AT1G80320:exon:3 |
258
|
Chr1: 30197639-30197896 | Arabidopsis thaliana |
| AT1G80330:exon:2 |
598
|
Chr1: 30198061-30198658 | Arabidopsis thaliana |
Five Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G80310:five_prime_UTR:1 |
333
|
Chr1: 30194618-30194950 | Arabidopsis thaliana |
Genes
| DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
|---|---|---|---|---|---|---|---|---|---|---|
| AT1G80300 | locus:2034235 | NTT1 | nucleotide transporter 1 |
3068
|
Chr1: 30191538-30194605 | A. thaliana | nucleotide transporter 1;(source:Araport11) | Encodes an ATP/ADP transporter. The mRNA is cell-to-cell mobile. | nucleotide transporter 1 | ATNTT1, NTT1 |
| AT1G80310 | locus:2034245 | MOT2 | molybdate transporter 2 |
1937
|
Chr1: 30194618-30196554 | A. thaliana | sulfate transmembrane transporter;(source:Araport11) | MOT2 encodes a molybdate transporter which locates to the vacuolar membrane. Loss-of-function (knock out) mutants show elevated molydate levels in rosette leaves and in fully senescent leaves, but decreased MoO4 levels in seeds. Under conditions of molybdate deficiency leaves from mot2::tDNA mutants show strongly reduced nitrate reductase activity. The mot2 gene is slightly expressed in young and mature leaves, but strongly in senescing leaves. This observation points to a function of MOT2 in molybdate transfer from leaves to seeds during plant senescence. | sulfate transmembrane transporters | MOT2 |
| AT1G80315 | AT1G80315 |
1035
|
Chr1: 30194698-30195732 | A. thaliana | hypothetical protein;(source:Araport11) | NULL | ||||
| AT1G80320 | locus:2034255 | AT1G80320 |
1115
|
Chr1: 30196782-30197896 | A. thaliana | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11) | NULL | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||
| AT1G80330 | locus:2034195 | GA3OX4 | gibberellin 3-oxidase 4 |
1477
|
Chr1: 30198061-30199537 | A. thaliana | gibberellin 3-oxidase 4;(source:Araport11) | Encodes a protein with gibberellin 3-oxidase activity. The enzyme, expressed and purified in E.coli, was shown to catalyze the 3β-hydroxylation of GA20 into GA29. | gibberellin 3-oxidase 4 | ATGA3OX4, GA3OX4 |
mRNAs
| DB identifier | Length | Chromosome Location |
|---|---|---|
| AT1G80300.1 |
2616
|
Chr1: 30191538-30194605 |
| AT1G80310.1 |
1937
|
Chr1: 30194618-30196554 |
| AT1G80315.1 |
1035
|
Chr1: 30194698-30195732 |
| AT1G80320.1 |
963
|
Chr1: 30196782-30197896 |
| AT1G80330.1 |
1068
|
Chr1: 30198061-30199537 |
Three Prime UTRs
| DB identifier | Length | Chromosome Location |
Organism . Name |
|---|---|---|---|
| AT1G80300:three_prime_UTR:1 |
325
|
Chr1: 30194281-30194605 | Arabidopsis thaliana |
| AT1G80310:three_prime_UTR:1 |
209
|
Chr1: 30196346-30196554 | Arabidopsis thaliana |
| AT1G80315:three_prime_UTR:1 |
726
|
Chr1: 30194698-30195423 | Arabidopsis thaliana |
Function
Gene Ontology
| cellular component | |
|---|---|
| No terms in this category. | |
| molecular function | |
| No terms in this category. | |
| biological process | |
| No terms in this category. |
Interactions
Interaction Network
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