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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G72550:CDS:20 | 69 | Chr1: 27319947-27320015 | Arabidopsis thaliana |
AT1G72550:CDS:18 | 84 | Chr1: 27320101-27320184 | Arabidopsis thaliana |
AT1G72550:CDS:17 | 117 | Chr1: 27320279-27320395 | Arabidopsis thaliana |
AT1G72550:CDS:16 | 108 | Chr1: 27320504-27320611 | Arabidopsis thaliana |
AT1G72550:CDS:15 | 75 | Chr1: 27320695-27320769 | Arabidopsis thaliana |
AT1G72550:CDS:14 | 132 | Chr1: 27320855-27320986 | Arabidopsis thaliana |
AT1G72550:CDS:13 | 102 | Chr1: 27321109-27321210 | Arabidopsis thaliana |
AT1G72550:CDS:12 | 129 | Chr1: 27321306-27321434 | Arabidopsis thaliana |
AT1G72550:CDS:11 | 168 | Chr1: 27321570-27321737 | Arabidopsis thaliana |
AT1G72550:CDS:10 | 127 | Chr1: 27321809-27321935 | Arabidopsis thaliana |
AT1G72550:CDS:9 | 77 | Chr1: 27322090-27322166 | Arabidopsis thaliana |
AT1G72550:CDS:8 | 42 | Chr1: 27322381-27322422 | Arabidopsis thaliana |
AT1G72550:CDS:7 | 42 | Chr1: 27322673-27322714 | Arabidopsis thaliana |
AT1G72550:CDS:6 | 67 | Chr1: 27322895-27322961 | Arabidopsis thaliana |
AT1G72550:CDS:5 | 116 | Chr1: 27323106-27323221 | Arabidopsis thaliana |
AT1G72550:CDS:4 | 130 | Chr1: 27323296-27323425 | Arabidopsis thaliana |
AT1G72550:CDS:3 | 98 | Chr1: 27323519-27323616 | Arabidopsis thaliana |
AT1G72550:CDS:2 | 56 | Chr1: 27323705-27323760 | Arabidopsis thaliana |
AT1G72550:CDS:1 | 58 | Chr1: 27323851-27323908 | Arabidopsis thaliana |
AT1G72550:CDS:19 | 27 | Chr1: 27319999-27320025 | Arabidopsis thaliana |
AT1G72550:CDS:18.1 | 84 | Chr1: 27320101-27320184 | Arabidopsis thaliana |
AT1G72550:CDS:17.1 | 117 | Chr1: 27320279-27320395 | Arabidopsis thaliana |
AT1G72550:CDS:16.1 | 108 | Chr1: 27320504-27320611 | Arabidopsis thaliana |
AT1G72550:CDS:15.1 | 75 | Chr1: 27320695-27320769 | Arabidopsis thaliana |
AT1G72550:CDS:14.1 | 132 | Chr1: 27320855-27320986 | Arabidopsis thaliana |
AT1G72550:CDS:13.1 | 102 | Chr1: 27321109-27321210 | Arabidopsis thaliana |
AT1G72550:CDS:12.1 | 129 | Chr1: 27321306-27321434 | Arabidopsis thaliana |
AT1G72550:CDS:11.1 | 168 | Chr1: 27321570-27321737 | Arabidopsis thaliana |
AT1G72550:CDS:10.1 | 127 | Chr1: 27321809-27321935 | Arabidopsis thaliana |
AT1G72550:CDS:9.1 | 77 | Chr1: 27322090-27322166 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G72550:exon:21 | 328 | Chr1: 27319688-27320015 | Arabidopsis thaliana |
AT1G72550:exon:1 | 262 | Chr1: 27323851-27324112 | Arabidopsis thaliana |
AT1G72550:exon:20 | 275 | Chr1: 27319751-27320025 | Arabidopsis thaliana |
AT1G72550:exon:19 | 84 | Chr1: 27320101-27320184 | Arabidopsis thaliana |
AT1G72550:exon:18 | 117 | Chr1: 27320279-27320395 | Arabidopsis thaliana |
AT1G72550:exon:17 | 108 | Chr1: 27320504-27320611 | Arabidopsis thaliana |
AT1G72550:exon:16 | 75 | Chr1: 27320695-27320769 | Arabidopsis thaliana |
AT1G72550:exon:15 | 132 | Chr1: 27320855-27320986 | Arabidopsis thaliana |
AT1G72550:exon:14 | 102 | Chr1: 27321109-27321210 | Arabidopsis thaliana |
AT1G72550:exon:13 | 129 | Chr1: 27321306-27321434 | Arabidopsis thaliana |
AT1G72550:exon:12 | 168 | Chr1: 27321570-27321737 | Arabidopsis thaliana |
AT1G72550:exon:11 | 127 | Chr1: 27321809-27321935 | Arabidopsis thaliana |
AT1G72550:exon:10 | 77 | Chr1: 27322090-27322166 | Arabidopsis thaliana |
AT1G72550:exon:9 | 42 | Chr1: 27322381-27322422 | Arabidopsis thaliana |
AT1G72550:exon:8 | 42 | Chr1: 27322673-27322714 | Arabidopsis thaliana |
AT1G72550:exon:7 | 67 | Chr1: 27322895-27322961 | Arabidopsis thaliana |
AT1G72550:exon:6 | 116 | Chr1: 27323106-27323221 | Arabidopsis thaliana |
AT1G72550:exon:5 | 130 | Chr1: 27323296-27323425 | Arabidopsis thaliana |
AT1G72550:exon:4 | 98 | Chr1: 27323519-27323616 | Arabidopsis thaliana |
AT1G72550:exon:3 | 56 | Chr1: 27323705-27323760 | Arabidopsis thaliana |
AT1G72550:exon:2 | 165 | Chr1: 27323851-27324015 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G72550:five_prime_UTR:1 | 204 | Chr1: 27323909-27324112 | Arabidopsis thaliana |
AT1G72550:five_prime_UTR:2 | 107 | Chr1: 27323909-27324015 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G72550.1 | 2260 | Chr1: 27319688-27324112 |
AT1G72550.2 | 2110 | Chr1: 27319751-27324015 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G72550:three_prime_UTR:2 | 259 | Chr1: 27319688-27319946 | Arabidopsis thaliana |
AT1G72550:three_prime_UTR:1 | 248 | Chr1: 27319751-27319998 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
F4IDD6_ARATH SYFB_ARATH | similarity | Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 2 subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
cytosol | ECO |
mitochondrion | ECO |
molecular function | |
ATP binding | ECO |
phenylalanine-tRNA ligase activity | ECO |
RNA binding | ECO |
magnesium ion binding | ECO |
biological process | |
phenylalanyl-tRNA aminoacylation | ECO |
Interactions
Interaction Network
Show the following interaction types:
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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