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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53730:CDS:1 | 94 | Chr1: 20061771-20061864 | Arabidopsis thaliana |
AT1G53730:CDS:2 | 133 | Chr1: 20062250-20062382 | Arabidopsis thaliana |
AT1G53730:CDS:3 | 75 | Chr1: 20062464-20062538 | Arabidopsis thaliana |
AT1G53730:CDS:4 | 66 | Chr1: 20062636-20062701 | Arabidopsis thaliana |
AT1G53730:CDS:5 | 72 | Chr1: 20062782-20062853 | Arabidopsis thaliana |
AT1G53730:CDS:6 | 72 | Chr1: 20062940-20063011 | Arabidopsis thaliana |
AT1G53730:CDS:7 | 72 | Chr1: 20063084-20063155 | Arabidopsis thaliana |
AT1G53730:CDS:8 | 66 | Chr1: 20063230-20063295 | Arabidopsis thaliana |
AT1G53730:CDS:9 | 63 | Chr1: 20063379-20063441 | Arabidopsis thaliana |
AT1G53730:CDS:10 | 317 | Chr1: 20063517-20063833 | Arabidopsis thaliana |
AT1G53730:CDS:11 | 287 | Chr1: 20063925-20064211 | Arabidopsis thaliana |
AT1G53730:CDS:12 | 272 | Chr1: 20064299-20064570 | Arabidopsis thaliana |
AT1G53730:CDS:13 | 133 | Chr1: 20064656-20064788 | Arabidopsis thaliana |
AT1G53730:CDS:14 | 134 | Chr1: 20064869-20065002 | Arabidopsis thaliana |
AT1G53730:CDS:15 | 160 | Chr1: 20065092-20065251 | Arabidopsis thaliana |
AT1G53730:CDS:17 | 147 | Chr1: 20065329-20065475 | Arabidopsis thaliana |
AT1G53730:CDS:1.1 | 94 | Chr1: 20061771-20061864 | Arabidopsis thaliana |
AT1G53730:CDS:2.1 | 133 | Chr1: 20062250-20062382 | Arabidopsis thaliana |
AT1G53730:CDS:3.1 | 75 | Chr1: 20062464-20062538 | Arabidopsis thaliana |
AT1G53730:CDS:4.1 | 66 | Chr1: 20062636-20062701 | Arabidopsis thaliana |
AT1G53730:CDS:5.1 | 72 | Chr1: 20062782-20062853 | Arabidopsis thaliana |
AT1G53730:CDS:6.1 | 72 | Chr1: 20062940-20063011 | Arabidopsis thaliana |
AT1G53730:CDS:7.1 | 72 | Chr1: 20063084-20063155 | Arabidopsis thaliana |
AT1G53730:CDS:8.1 | 66 | Chr1: 20063230-20063295 | Arabidopsis thaliana |
AT1G53730:CDS:9.1 | 63 | Chr1: 20063379-20063441 | Arabidopsis thaliana |
AT1G53730:CDS:10.1 | 317 | Chr1: 20063517-20063833 | Arabidopsis thaliana |
AT1G53730:CDS:11.1 | 287 | Chr1: 20063925-20064211 | Arabidopsis thaliana |
AT1G53730:CDS:12.1 | 272 | Chr1: 20064299-20064570 | Arabidopsis thaliana |
AT1G53730:CDS:13.1 | 133 | Chr1: 20064656-20064788 | Arabidopsis thaliana |
AT1G53730:CDS:14.1 | 134 | Chr1: 20064869-20065002 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53730:exon:1 | 460 | Chr1: 20061405-20061864 | Arabidopsis thaliana |
AT1G53730:exon:16 | 160 | Chr1: 20065092-20065251 | Arabidopsis thaliana |
AT1G53730:exon:2 | 383 | Chr1: 20061482-20061864 | Arabidopsis thaliana |
AT1G53730:exon:3 | 133 | Chr1: 20062250-20062382 | Arabidopsis thaliana |
AT1G53730:exon:4 | 75 | Chr1: 20062464-20062538 | Arabidopsis thaliana |
AT1G53730:exon:5 | 66 | Chr1: 20062636-20062701 | Arabidopsis thaliana |
AT1G53730:exon:6 | 72 | Chr1: 20062782-20062853 | Arabidopsis thaliana |
AT1G53730:exon:7 | 72 | Chr1: 20062940-20063011 | Arabidopsis thaliana |
AT1G53730:exon:8 | 72 | Chr1: 20063084-20063155 | Arabidopsis thaliana |
AT1G53730:exon:9 | 66 | Chr1: 20063230-20063295 | Arabidopsis thaliana |
AT1G53730:exon:10 | 63 | Chr1: 20063379-20063441 | Arabidopsis thaliana |
AT1G53730:exon:11 | 317 | Chr1: 20063517-20063833 | Arabidopsis thaliana |
AT1G53730:exon:12 | 287 | Chr1: 20063925-20064211 | Arabidopsis thaliana |
AT1G53730:exon:13 | 272 | Chr1: 20064299-20064570 | Arabidopsis thaliana |
AT1G53730:exon:14 | 133 | Chr1: 20064656-20064788 | Arabidopsis thaliana |
AT1G53730:exon:15 | 134 | Chr1: 20064869-20065002 | Arabidopsis thaliana |
AT1G53730:exon:17 | 157 | Chr1: 20065095-20065251 | Arabidopsis thaliana |
AT1G53730:exon:18 | 385 | Chr1: 20065329-20065713 | Arabidopsis thaliana |
AT1G53750:exon:10 | 685 | Chr1: 20065394-20066078 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53730:five_prime_UTR:1 | 366 | Chr1: 20061405-20061770 | Arabidopsis thaliana |
AT1G53730:five_prime_UTR:2 | 289 | Chr1: 20061482-20061770 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G53750 | locus:2024822 | RPT1A | regulatory particle triple-A 1A | 3107 | Chr1: 20065394-20068500 | A. thaliana | regulatory particle triple-A 1A;(source:Araport11) | 26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA, | regulatory particle triple-A 1A | RPT1A |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G53730.2 | 2767 | Chr1: 20061405-20065713 |
AT1G53730.1 | 2687 | Chr1: 20061482-20065713 |
AT1G53750.1 | 1984 | Chr1: 20065394-20068500 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G53730:three_prime_UTR:1 | 238 | Chr1: 20065476-20065713 | Arabidopsis thaliana |
AT1G53750:three_prime_UTR:1 | 527 | Chr1: 20065394-20065920 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
SRF6_ARATH | similarity | Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. |
SRF6_ARATH | tissue specificity | Expressed in seedlings, roots, stems, leaves, flowers and siliques. |
Function
Gene Ontology
cellular component | |
---|---|
plasma membrane | ECO |
molecular function | |
ATP binding | ECO |
protein kinase activity | ECO |
biological process | |
protein phosphorylation | ECO |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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