External Links
- Aracyc
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- Plant Proteome Database
- SUBA
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- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
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- Agrisera Antibodies
- ATTED-II
- T-DNA Express
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Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
Antisense lncRNAs: 7, CDSs: 2, Exons: 23, Five Prime UTRs: 3, Genes: 4, Lnc RNA: 1, mRNAs: 2, Three Prime UTR: 1
Antisense lncRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G26208.1 | 3532 | Chr1: 9065955-9071457 |
AT1G26208.2 | 3729 | Chr1: 9065955-9071468 |
AT1G26208.3 | 2759 | Chr1: 9066044-9071452 |
AT1G26208.4 | 3144 | Chr1: 9066200-9071462 |
AT1G26208.5 | 2288 | Chr1: 9066319-9068685 |
AT1G26208.6 | 2181 | Chr1: 9066319-9068685 |
AT1G26218.1 | 1135 | Chr1: 9071058-9072273 |
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G26210:CDS:1 | 447 | Chr1: 9067524-9067970 | Arabidopsis thaliana |
AT1G26220:CDS:1 | 594 | Chr1: 9071157-9071750 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G26208:exon:18 | 1347 | Chr1: 9065955-9067301 | Arabidopsis thaliana |
AT1G26208:exon:11 | 354 | Chr1: 9067488-9067841 | Arabidopsis thaliana |
AT1G26208:exon:4 | 1239 | Chr1: 9070219-9071457 | Arabidopsis thaliana |
AT1G26208:exon:17 | 1887 | Chr1: 9065955-9067841 | Arabidopsis thaliana |
AT1G26208:exon:9 | 190 | Chr1: 9068057-9068246 | Arabidopsis thaliana |
AT1G26208:exon:7 | 312 | Chr1: 9069033-9069344 | Arabidopsis thaliana |
AT1G26208:exon:3 | 1250 | Chr1: 9070219-9071468 | Arabidopsis thaliana |
AT1G26208:exon:16 | 2203 | Chr1: 9066044-9068246 | Arabidopsis thaliana |
AT1G26208:exon:1 | 297 | Chr1: 9071156-9071452 | Arabidopsis thaliana |
AT1G26208:exon:15 | 1102 | Chr1: 9066200-9067301 | Arabidopsis thaliana |
AT1G26208:exon:13 | 866 | Chr1: 9067381-9068246 | Arabidopsis thaliana |
AT1G26208:exon:8 | 60 | Chr1: 9069033-9069092 | Arabidopsis thaliana |
AT1G26208:exon:6 | 109 | Chr1: 9069236-9069344 | Arabidopsis thaliana |
AT1G26208:exon:5 | 90 | Chr1: 9069434-9069523 | Arabidopsis thaliana |
AT1G26208:exon:2 | 917 | Chr1: 9070546-9071462 | Arabidopsis thaliana |
AT1G26208:exon:12 | 1305 | Chr1: 9067381-9068685 | Arabidopsis thaliana |
AT1G26208:exon:14 | 983 | Chr1: 9066319-9067301 | Arabidopsis thaliana |
AT1G26208:exon:10 | 1198 | Chr1: 9067488-9068685 | Arabidopsis thaliana |
AT1G26210:exon:1 | 387 | Chr1: 9067039-9067425 | Arabidopsis thaliana |
AT1G26210:exon:2 | 686 | Chr1: 9067522-9068207 | Arabidopsis thaliana |
AT1G05987:exon:1 | 414 | Chr1: 9069770-9070183 | Arabidopsis thaliana |
AT1G26218:exon:2 | 834 | Chr1: 9071058-9071891 | Arabidopsis thaliana |
AT1G26220:exon:1 | 722 | Chr1: 9071140-9071861 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G26210:five_prime_UTR:1 | 387 | Chr1: 9067039-9067425 | Arabidopsis thaliana |
AT1G26210:five_prime_UTR:2 | 2 | Chr1: 9067522-9067523 | Arabidopsis thaliana |
AT1G26220:five_prime_UTR:1 | 17 | Chr1: 9071140-9071156 | Arabidopsis thaliana |
Genes
DB identifier | Secondary Identifier | Symbol | Name | Length | Chromosome Location |
Organism . Short Name |
TAIR Computational Description | TAIR Curator Summary | TAIR Short Description | TAIR Aliases |
---|---|---|---|---|---|---|---|---|---|---|
AT1G26210 | locus:2028792 | SOFL1 | SOB five-like 1 | 1169 | Chr1: 9067039-9068207 | A. thaliana | SOB five-like 1;(source:Araport11) | AtSOFL1 acts redundantly with AtSOFL2 as positive regulator of cytokinin levels. | SOB five-like 1 | ATSOFL1, SOFL1 |
AT1G05987 | AT1G05987 | 414 | Chr1: 9069770-9070183 | A. thaliana | None;(source:Araport11) | NULL | ||||
AT1G26218 | locus:4010713472 | AT1G26218 | 1216 | Chr1: 9071058-9072273 | A. thaliana | Natural antisense transcript overlaps with AT1G26220;(source:Araport11) | Natural antisense transcript overlaps with AT1G26220. Has been identified as a translated small open reading frame by ribosome profiling. | other RNA | sORF14 | |
AT1G26220 | locus:2028766 | AT1G26220 | 722 | Chr1: 9071140-9071861 | A. thaliana | Acyl-CoA N-acyltransferases (NAT) superfamily protein;(source:Araport11) | Catalyzes formation of N-acetylserotonin (NAS) from serotonin. Involved in the GA-related flowering pathway. | Acyl-CoA N-acyltransferases (NAT) superfamily protein | GNAT1, SNAT2 |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G26210.1 | 1073 | Chr1: 9067039-9068207 |
AT1G26220.1 | 722 | Chr1: 9071140-9071861 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G26210:three_prime_UTR:1 | 237 | Chr1: 9067971-9068207 | Arabidopsis thaliana |
Function
Gene Ontology
cellular component | |
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No terms in this category. | |
molecular function | |
No terms in this category. | |
biological process | |
No terms in this category. |
Interactions
Interaction Network
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Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
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Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
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