External Links
- Aracyc
- AceView
- Plant Proteome Database
- SUBA
- Gramene
- GeneVisible
- ABRC
- TAIR
- EnsemblPlants
- PGDD
- AtcisDB
- Plaza
- pep2pro
- NCBI-Entrez
- PIR
- AtGDB
- Agrisera Antibodies
- ATTED-II
- T-DNA Express
- AtGenExpress
- AthaMap
- Phytozome
Genomics
Overlapping Features
Genome features that overlap coordinates of this Gene
CDSs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23480:CDS:1 | 66 | Chr1: 8333917-8333982 | Arabidopsis thaliana |
AT1G23480:CDS:2 | 333 | Chr1: 8334082-8334414 | Arabidopsis thaliana |
AT1G23480:CDS:4 | 99 | Chr1: 8334511-8334609 | Arabidopsis thaliana |
AT1G23480:CDS:6 | 253 | Chr1: 8334720-8334972 | Arabidopsis thaliana |
AT1G23480:CDS:7 | 248 | Chr1: 8335056-8335303 | Arabidopsis thaliana |
AT1G23480:CDS:8 | 314 | Chr1: 8335388-8335701 | Arabidopsis thaliana |
AT1G23480:CDS:9 | 195 | Chr1: 8335788-8335982 | Arabidopsis thaliana |
AT1G23480:CDS:10 | 163 | Chr1: 8336068-8336230 | Arabidopsis thaliana |
AT1G23480:CDS:5 | 316 | Chr1: 8334657-8334972 | Arabidopsis thaliana |
AT1G23480:CDS:7.1 | 248 | Chr1: 8335056-8335303 | Arabidopsis thaliana |
AT1G23480:CDS:8.1 | 314 | Chr1: 8335388-8335701 | Arabidopsis thaliana |
AT1G23480:CDS:9.1 | 195 | Chr1: 8335788-8335982 | Arabidopsis thaliana |
AT1G23480:CDS:10.1 | 163 | Chr1: 8336068-8336230 | Arabidopsis thaliana |
AT1G23480:CDS:1.1 | 66 | Chr1: 8333917-8333982 | Arabidopsis thaliana |
AT1G23480:CDS:2.1 | 333 | Chr1: 8334082-8334414 | Arabidopsis thaliana |
AT1G23480:CDS:4.1 | 99 | Chr1: 8334511-8334609 | Arabidopsis thaliana |
AT1G23480:CDS:6.1 | 253 | Chr1: 8334720-8334972 | Arabidopsis thaliana |
AT1G23480:CDS:7.2 | 248 | Chr1: 8335056-8335303 | Arabidopsis thaliana |
AT1G23480:CDS:8.2 | 314 | Chr1: 8335388-8335701 | Arabidopsis thaliana |
AT1G23480:CDS:9.2 | 195 | Chr1: 8335788-8335982 | Arabidopsis thaliana |
AT1G23480:CDS:10.2 | 163 | Chr1: 8336068-8336230 | Arabidopsis thaliana |
AT1G23480:CDS:3 | 183 | Chr1: 8334232-8334414 | Arabidopsis thaliana |
AT1G23480:CDS:4.2 | 99 | Chr1: 8334511-8334609 | Arabidopsis thaliana |
AT1G23480:CDS:6.2 | 253 | Chr1: 8334720-8334972 | Arabidopsis thaliana |
AT1G23480:CDS:7.3 | 248 | Chr1: 8335056-8335303 | Arabidopsis thaliana |
AT1G23480:CDS:8.3 | 314 | Chr1: 8335388-8335701 | Arabidopsis thaliana |
AT1G23480:CDS:9.3 | 195 | Chr1: 8335788-8335982 | Arabidopsis thaliana |
AT1G23480:CDS:10.3 | 163 | Chr1: 8336068-8336230 | Arabidopsis thaliana |
Exons
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23480:exon:1 | 254 | Chr1: 8332862-8333115 | Arabidopsis thaliana |
AT1G23480:exon:4 | 159 | Chr1: 8333824-8333982 | Arabidopsis thaliana |
AT1G23480:exon:12 | 318 | Chr1: 8336068-8336385 | Arabidopsis thaliana |
AT1G23480:exon:7 | 462 | Chr1: 8334511-8334972 | Arabidopsis thaliana |
AT1G23480:exon:14 | 346 | Chr1: 8336068-8336413 | Arabidopsis thaliana |
AT1G23480:exon:2 | 511 | Chr1: 8333472-8333982 | Arabidopsis thaliana |
AT1G23480:exon:5 | 333 | Chr1: 8334082-8334414 | Arabidopsis thaliana |
AT1G23480:exon:15 | 347 | Chr1: 8336068-8336414 | Arabidopsis thaliana |
AT1G23480:exon:3 | 719 | Chr1: 8333696-8334414 | Arabidopsis thaliana |
AT1G23480:exon:6 | 99 | Chr1: 8334511-8334609 | Arabidopsis thaliana |
AT1G23480:exon:8 | 253 | Chr1: 8334720-8334972 | Arabidopsis thaliana |
AT1G23480:exon:9 | 248 | Chr1: 8335056-8335303 | Arabidopsis thaliana |
AT1G23480:exon:10 | 314 | Chr1: 8335388-8335701 | Arabidopsis thaliana |
AT1G23480:exon:11 | 195 | Chr1: 8335788-8335982 | Arabidopsis thaliana |
AT1G23480:exon:13 | 321 | Chr1: 8336068-8336388 | Arabidopsis thaliana |
Five Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23480:five_prime_UTR:1 | 254 | Chr1: 8332862-8333115 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:5 | 93 | Chr1: 8333824-8333916 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:3 | 511 | Chr1: 8333472-8333982 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:6 | 333 | Chr1: 8334082-8334414 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:7 | 146 | Chr1: 8334511-8334656 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:2 | 445 | Chr1: 8333472-8333916 | Arabidopsis thaliana |
AT1G23480:five_prime_UTR:4 | 536 | Chr1: 8333696-8334231 | Arabidopsis thaliana |
mRNAs
DB identifier | Length | Chromosome Location |
---|---|---|
AT1G23480.1 | 2173 | Chr1: 8332862-8336385 |
AT1G23480.4 | 2409 | Chr1: 8333472-8336413 |
AT1G23480.2 | 2300 | Chr1: 8333472-8336414 |
AT1G23480.3 | 2149 | Chr1: 8333696-8336388 |
Three Prime UTRs
DB identifier | Length | Chromosome Location |
Organism . Name |
---|---|---|---|
AT1G23480:three_prime_UTR:1 | 155 | Chr1: 8336231-8336385 | Arabidopsis thaliana |
AT1G23480:three_prime_UTR:3 | 183 | Chr1: 8336231-8336413 | Arabidopsis thaliana |
AT1G23480:three_prime_UTR:4 | 184 | Chr1: 8336231-8336414 | Arabidopsis thaliana |
AT1G23480:three_prime_UTR:2 | 158 | Chr1: 8336231-8336388 | Arabidopsis thaliana |
Proteins
Curated comments from UniProt
Type | Comment | Proteins |
---|---|---|
CSLA3_ARATH-2 CSLA3_ARATH | function | Probable mannan synthase which consists of a 4-beta-mannosyltransferase activity on mannan using GDP-mannose. The beta-1,4-mannan product is the backbone for galactomannan synthesis by galactomannan galactosyltransferase. Galactomannan is a noncellulosic polysaccharides of plant cell wall. |
CSLA3_ARATH-2 CSLA3_ARATH | similarity | Belongs to the glycosyltransferase 2 family. Plant cellulose synthase-like A subfamily. |
Function
Gene Ontology
cellular component | |
---|---|
Golgi membrane | ECO |
molecular function | |
glucomannan 4-beta-mannosyltransferase activity | ECO |
biological process | |
cell wall organization | ECO |
Interactions
Interaction Network
Show the following interaction types:
Reset view
Show in table format
Export graph
- Click on a gene to get more info about it.
Expression
Co-expression
Querying ATTED Service...
Data Source: ATTED-II |
---|
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.
Waiting for results...