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Gene : ARF19 A. thaliana

DB identifier  ? AT1G19220 Secondary Identifier  ? locus:2202205
Name  ? auxin response factor 19 Brief Description  auxin response factor 19
TAIR Computational Description  auxin response factor 19;(source:Araport11)
TAIR Curator Summary  Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin.
TAIR Short Description  auxin response factor 19
TAIR Aliases  ARF11, ARF19, IAA22

9 Gene Rifs

1 Organism

55 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 5451  
Location: Chr1:6627683-6633133 reverse strand

Gene models - ARF19 AT1G19220

? Gene models

Transcripts: 1  Exons: 12  Introns: 11 

Overlapping Features

? Genome features that overlap coordinates of this Gene

13 Child Features

1 Cross References

0 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
ARFS_ARATH function Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in ethylene responses. Regulates lateral root formation through direct regulation of LBD16 and/or LBD29 (PubMed:29184030). Functionally redundant with ARF7 (PubMed:29184030). Involved in cellular dedifferentiation during callus formation on callus-inducing medium (CIM) and in an ATXR2-dependent manner (PubMed:29184030).
ARFS_ARATH similarity Belongs to the ARF family.

1 Proteins

Function

Gene Ontology

cellular component
nucleus  ? ECO  
molecular function
sequence-specific DNA binding  ? ECO  
DNA-binding transcription factor activity  ? ECO  
DNA binding  ? ECO  
transcription cis-regulatory region binding  ? ECO  
biological process
leaf development  ? ECO  
response to auxin  ? ECO  
callus formation  ? ECO  
lateral root development  ? ECO  
lateral root formation  ? ECO  
response to ethylene  ? ECO  
auxin-activated signaling pathway  ? ECO  

Interactions

Interaction Network

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Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets