help  | faq  | software  | BAR
Hide

Oops!

Error: 403
Hide

Oops!

https://bar.utoronto.ca/thalemine/service/ is incorrect

Gene : SR30 A. thaliana

DB identifier  ? AT1G09140 Secondary Identifier  ? locus:2195346
Name  ? Serine/Arginine-Rich Protein Splicing Factor 30 Brief Description  SERINE-ARGININE PROTEIN 30
TAIR Computational Description  SERINE-ARGININE PROTEIN 30;(source:Araport11)
TAIR Curator Summary  Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. AT1G09140.1 predominantly accumulates in the cytosol in light grown plants.Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
TAIR Short Description  SERINE-ARGININE PROTEIN 30
TAIR Aliases  At-SR30, ATSRP30, SR30

3 Gene Rifs

1 Organism

30 Publications

0 Synonyms

Genomics

Genome feature

Region: gene ? Length: 3439  
Location: Chr1:2942538-2945976 reverse strand

Gene models - SR30 AT1G09140

? Gene models

Transcripts: 3  Exons: 35  Introns: 32 

Overlapping Features

? Genome features that overlap coordinates of this Gene

17 Child Features

1 Cross References

1 Downstream Intergenic Region

0 Located Features

1 Upstream Intergenic Region

Proteins

Curated comments from UniProt

Type Comment Proteins
SR30_ARATH SR30_ARATH-2 function Regulatory splicing factor that modulates alternative splicing and gene expression in specific cell types. Autoregulates its own expression. Probably involved in intron recognition and spliceosome assembly.
SR30_ARATH SR30_ARATH-2 similarity Belongs to the splicing factor SR family. SR subfamily.
SR30_ARATH SR30_ARATH-2 subcellular location Inhibition of phosphorylation causes suppression of nuclear localization.
SR30_ARATH SR30_ARATH-2 tissue specificity Ubiquitous.

3 Proteins

Function

Gene Ontology

cellular component
spliceosomal complex  ? ECO  
cytosol  ? ECO  
nucleus  ? ECO  
nuclear speck  ? ECO  
molecular function
RNA binding  ? ECO  
biological process
RNA splicing  ? ECO  
mRNA processing  ? ECO  

Interactions

Interaction Network

Show the following interaction types:
Reset view
Show in table format
Export graph

Click on a gene to get more info about it.

Expression

eFP Visualization

Data Source: BAR




Co-expression

Querying ATTED Service...
Data Source: ATTED-II
Top N
LS: LS is a monotonic transformation (negative logit) of MR index. Larger LS indicates stronger co-expression.

 

Homology

Phytozome Homologs

Data Source: Phytozome


0 Homologues

 

Other

9 Data Sets