NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:177
Title:AtGenExpress:GA3 time course in wildtype and ga1-5 mutant seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type and ga1 mutant seedlings were treated with GA3 for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA12A2855seedling N1092RIKENGODA12A.cel
Treatment: 1uM GA3 for 1h
RIKEN-GODA12B2856seedling N1092RIKENGODA12B.cel
Treatment: 1uM GA3 for 1h
RIKEN-GODA17A12857seedling N1092RIKENGODA17A1.cel
Treatment: mock treatment for 3h
RIKEN-GODA17B12858seedling N1092RIKENGODA17B1.cel
Treatment: mock treatment for 3h
RIKEN-GODA1A12859seedling N1092RIKENGODA1A1.cel
Treatment: mock treatment for 30min
RIKEN-GODA1B12860seedling N1092RIKENGODA1B1.cel
Treatment: mock treatment for 30min
RIKEN-GODA20A2861seedling N1092RIKENGODA20A.cel
Treatment: 1uM GA3 for 3h
RIKEN-GODA20B2862seedling N1092RIKENGODA20B.cel
Treatment: 1uM GA3 for 3h
RIKEN-GODA25A2863Lerseedling N3106RIKENGODA25A.cel
Treatment: mock treatment for 30min
RIKEN-GODA25B2864Lerseedling N3106RIKENGODA25B.cel
Treatment: mock treatment for 30min
RIKEN-GODA26A2865Lerseedling N3106RIKENGODA26A.cel
Treatment: 1uM GA3 for 30min
RIKEN-GODA26B2866Lerseedling N3106RIKENGODA26B.cel
Treatment: 1uM GA3 for 30min
RIKEN-GODA27A2867Lerseedling N3106RIKENGODA27A.cel
Treatment: mock treatment for 1h
RIKEN-GODA27B2868Lerseedling N3106RIKENGODA27B.cel
Treatment: mock treatment for 1h
RIKEN-GODA28A2869Lerseedling N3106RIKENGODA28A.cel
Treatment: 1uM GA3 for 1h
RIKEN-GODA28B2870Lerseedling N3106RIKENGODA28B.cel
Treatment: 1uM GA3 for 1h
RIKEN-GODA29A2871Lerseedling N3106RIKENGODA29A.cel
Treatment: mock treatment for 3h
RIKEN-GODA29B2872Lerseedling N3106RIKENGODA29B.cel
Treatment: mock treatment for 3h
RIKEN-GODA30A2873Lerseedling N3106RIKENGODA30A.cel
Treatment: 1uM GA3 for 3h
RIKEN-GODA30B2874Lerseedling N3106RIKENGODA30B.cel
Treatment: 1uM GA3 for 3h
RIKEN-GODA4A2875seedling N1092RIKENGODA4A.cel
Treatment: 1uM GA3 for 30min
RIKEN-GODA4B2876seedling N1092RIKENGODA4B.cel
Treatment: 1uM GA3 for 30min
RIKEN-GODA9A12877seedling N1092RIKENGODA9A1.cel
Treatment: mock treatment for 1h
RIKEN-GODA9B12878seedling N1092RIKENGODA9B1.cel
Treatment: mock treatment for 1h