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Search results 201 to 300 out of 6518 for Microbe-associated molecular pattern

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Type Details Score
Ontology Term Synonym
Ontology Term Synonym
Name: metanephros pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: embryonic pattern biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: embryonic pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: anterior/posterior pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: radial pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: adaxial/abaxial pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: proximal/distal pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsal-ventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsal/ventral pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsoventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: apical-basal pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mediolateral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern specification
Type: synonym
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Gene
AT3G23050 | locus:2094598 | IAA7 | indole-3-acetic acid 7
Length: 2556  
Chromosome Location: Chr3: 8194606-8197161
Organism . Short Name: A. thaliana
TAIR Computational Description: indole-3-acetic acid 7;(source:Araport11)
TAIR Curator Summary: Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.
TAIR Short Description: indole-3-acetic acid 7
TAIR Aliases: AXR2, IAA7
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Gene
AT5G11060 | locus:2184911 | KNAT4 | KNOTTED1-like homeobox gene 4
Length: 3909  
Chromosome Location: Chr5: 3509833-3513741
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox protein knotted-1-like 4;(source:Araport11)
TAIR Curator Summary: A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.
TAIR Short Description: KNOTTED1-like homeobox gene 4
TAIR Aliases: KNAT4
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Gene
AT5G55540 | locus:2173952 | TRN1 | TORNADO 1
Length: 4519  
Chromosome Location: Chr5: 22496196-22500714
Organism . Short Name: A. thaliana
TAIR Computational Description: tornado 1;(source:Araport11)
TAIR Curator Summary: Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.
TAIR Short Description: tornado 1
TAIR Aliases: LOP1, TRN1
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Gene
AT2G27230 | locus:2039580 | LHW | LONESOME HIGHWAY
Length: 3786  
Chromosome Location: Chr2: 11650358-11654143
Organism . Short Name: A. thaliana
TAIR Computational Description: transcription factor-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.
TAIR Short Description: transcription factor-related
TAIR Aliases: LHW
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Gene
AT2G28620 | locus:2065505 | AT2G28620 | -
Length: 5836  
Chromosome Location: Chr2: 12264928-12270763
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced. Cellulose synthesis is also unchanged with respect to wild type. There is a disruption in the normal pattern of cell wall placement.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: RSW7
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Gene
AT3G53350 | locus:2083951 | RIP3 | ROP interactive partner 3
Length: 2773  
Chromosome Location: Chr3: 19779978-19782750
Organism . Short Name: A. thaliana
TAIR Computational Description: ROP interactive partner 4;(source:Araport11)
TAIR Curator Summary: Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.
TAIR Short Description: ROP interactive partner 4
TAIR Aliases: MIDD1, RIP3, RIP4
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Gene
AT5G63420 | locus:2167336 | emb2746 | embryo defective 2746
Length: 5934  
Chromosome Location: Chr5: 25400317-25406250
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-metabolising metallo-beta-lactamase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the metallo-beta-lactamase protein family that plays a vital role in embryo morphogenesis and apical-basal pattern formation by regulating chloroplast development. In bacteria, RNase J plays an important role in rRNA maturation and in the 5′ stability of mRNA.
TAIR Short Description: RNA-metabolising metallo-beta-lactamase family protein
TAIR Aliases: AtRNJ, emb2746, RNJ
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Gene
AT5G65050 | locus:2177749 | AGL31 | AGAMOUS-like 31
Length: 4182  
Chromosome Location: Chr5: 25982254-25986435
Organism . Short Name: A. thaliana
TAIR Computational Description: AGAMOUS-like 31;(source:Araport11)
TAIR Curator Summary: Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.
TAIR Short Description: AGAMOUS-like 31
TAIR Aliases: AGL31, MAF2
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Protein Domain
IPR036231
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Gene
AT3G49530 | locus:2114678 | NAC062 | NAC domain containing protein 62
Length: 2517  
Chromosome Location: Chr3: 18362443-18364959
Organism . Short Name: A. thaliana
TAIR Computational Description: NAC domain containing protein 62;(source:Araport11)
TAIR Curator Summary: Transcription factor that serves as a molecular link between cold signals and pathogen resistance responses. Undergoes proteolytic processing triggered by cold-induced changes in membrane fluidity.It relocates from the plasma membrane to the nucleus in response to ER stress. NAC062 is phosphorylated by SnRK2.8 at Thr-142.
TAIR Short Description: NAC domain containing protein 62
TAIR Aliases: ANAC062, NAC062, NTL6
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Gene
AT1G34260 | locus:2026109 | FAB1D | FORMS APLOID AND BINUCLEATE CELLS 1A
Length: 6890  
Chromosome Location: Chr1: 12485318-12492207
Organism . Short Name: A. thaliana
TAIR Computational Description: FORMS APLOID AND BINUCLEATE CELLS 1A;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the porposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.
TAIR Short Description: FORMS APLOID AND BINUCLEATE CELLS 1A
TAIR Aliases: FAB1D
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Gene
AT1G71010 | locus:2013965 | FAB1C | FORMS APLOID AND BINUCLEATE CELLS 1C
Length: 6926  
Chromosome Location: Chr1: 26782048-26788973
Organism . Short Name: A. thaliana
TAIR Computational Description: FORMS APLOID AND BINUCLEATE CELLS 1C;(source:Araport11)
TAIR Curator Summary: Encodes a protein that is predicted to act as a phosphatidylinositol-3P 5-kinase, but, because it lacks a FYVE domain, it is unlikely to be efficiently targeted to membranes containing the proposed phosphatidylinositol-3P substrate. Therefore, its molecular function remains unknown. The mRNA is cell-to-cell mobile.
TAIR Short Description: FORMS APLOID AND BINUCLEATE CELLS 1C
TAIR Aliases: FAB1C
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Protein Domain
IPR028790
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Gene
AT1G77850 | locus:2029436 | ARF17 | auxin response factor 17
Length: 3434  
Chromosome Location: Chr1: 29272074-29275507
Organism . Short Name: A. thaliana
TAIR Computational Description: auxin response factor 17;(source:Araport11)
TAIR Curator Summary: Encodes a transcriptional regulator that directly binds to the promoter of MYB108 and plays a crucial role in anther dehiscence, pollen wall pattern formation, tapetum development, and auxin signal transduction in anthers. It is post-transcriptionally regulated by miR160 and regulates early auxin response genes.
TAIR Short Description: auxin response factor 17
TAIR Aliases: ARF17
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Gene
AT5G51040 | locus:2157418 | SDHAF2 | Succinate dehydrogenase assembly factor 2
Length: 1603  
Chromosome Location: Chr5: 20750513-20752115
Organism . Short Name: A. thaliana
TAIR Computational Description: succinate dehydrogenase assembly factor;(source:Araport11)
TAIR Curator Summary: Encodes succinate dehydrogenase assembly factor 2 (SDHAF2), a low abundance mitochondrial protein needed for assembly and activity of mitochondrial complex II and for normal root elongation.Sdhaf2 knockdown line showed lowered SDH1 protein abundance, lowered maximal SDH activity and less protein-bound FAD at the molecular mass of SDH1.
TAIR Short Description: NULL
TAIR Aliases: SDHAF2
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Gene
AT5G45010 | locus:2155392 | DSS1(V) | DSS1 homolog on chromosome V
Length: 1486  
Chromosome Location: Chr5: 18166898-18168383
Organism . Short Name: A. thaliana
TAIR Computational Description: DSS1 homolog on chromosome V;(source:Araport11)
TAIR Curator Summary: Member of the intrinsically disordered protein family, interacts with different protein partners forming complexes involved in diverse biological mechanisms such as DNA repair, regulation of protein homeostasis, mRNA export. Role in the post-translational protein modification named DSSylation. Involved in molecular mechanisms underlying plant abiotic stress responses.
TAIR Short Description: DSS1 homolog on chromosome V
TAIR Aliases: ATDSS1(V), DSS1(V)
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Gene
AT1G04250 | locus:2018374 | AXR3 | AUXIN RESISTANT 3
Length: 2586  
Chromosome Location: Chr1: 1136078-1138663
Organism . Short Name: A. thaliana
TAIR Computational Description: AUX/IAA transcriptional regulator family protein;(source:Araport11)
TAIR Curator Summary: Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
TAIR Short Description: AUX/IAA transcriptional regulator family protein
TAIR Aliases: AtIAA17, AXR3, IAA17
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GO Term
GO:1901681 | sulfur compound binding
Description: Binding to a sulfur compound.
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Ontology Term Synonym
Ontology Term Synonym
Name: sulfur molecular entity binding
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity anabolism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity synthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity breakdown
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity catabolism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity degradation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: organic molecular entity metabolism
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: small molecular sensor activity
Type: synonym
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Gene
AT2G33590 | locus:2051008 | CRL1 | CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1
Length: 2369  
Chromosome Location: Chr2: 14224268-14226636
Organism . Short Name: A. thaliana
TAIR Computational Description: NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. The expression pattern of AtCRL1 indicates that CRL1 has a role in embryogenesis and seed germination. AtCRL1 is induced by ABA, drought and heat, and is highly expressed in seeds. The mRNA is cell-to-cell mobile.
TAIR Short Description: NAD(P)-binding Rossmann-fold superfamily protein
TAIR Aliases: AtCRL1, CRL1
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Gene
AT3G09600 | locus:2075049 | RVE8 | REVEILLE 8
Length: 2779  
Chromosome Location: Chr3: 2946239-2949017
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.
TAIR Short Description: Homeodomain-like superfamily protein
TAIR Aliases: LCL5, RVE8
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Gene
AT3G46510 | locus:2075140 | PUB13 | plant U-box 13
Length: 3167  
Chromosome Location: Chr3: 17123731-17126897
Organism . Short Name: A. thaliana
TAIR Computational Description: plant U-box 13;(source:Araport11)
TAIR Curator Summary: Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. Involved in ubiquitination of pattern recognition receptor FLS2.
TAIR Short Description: plant U-box 13
TAIR Aliases: ATPUB13, PUB13
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Gene
AT1G16510 | locus:2032915 | AT1G16510 | -
Length: 872  
Chromosome Location: Chr1: 5644572-5645443
Organism . Short Name: A. thaliana
TAIR Computational Description: SAUR-like auxin-responsive protein family;(source:Araport11)
TAIR Curator Summary: Encodes a clade III SAUR gene with a distinctive expression pattern in root meristems. It is normally expressed in the quiescent center and cortex/endodermis initials and upon auxin stimulation, the expression is found in the endodermal layer. Overexpression studies suggest roles in cell expansion and auxin transport.
TAIR Short Description: SAUR-like auxin-responsive protein family
TAIR Aliases: SAUR41
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Gene
AT5G35520 | locus:2169508 | MIS12 | MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE
Length: 1952  
Chromosome Location: Chr5: 13701290-13703241
Organism . Short Name: A. thaliana
TAIR Computational Description: minichromosome instability 12 (mis12)-like protein;(source:Araport11)
TAIR Curator Summary: encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.
TAIR Short Description: minichromosome instability 12 (mis12)-like
TAIR Aliases: ATMIS12, MIS12
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Gene
AT2G14610 | locus:2064294 | PR1 | pathogenesis-related gene 1
Length: 902  
Chromosome Location: Chr2: 6241640-6242541
Organism . Short Name: A. thaliana
TAIR Computational Description: pathogenesis-related protein 1;(source:Araport11)
TAIR Curator Summary: PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive.
TAIR Short Description: pathogenesis-related gene 1
TAIR Aliases: AtCAPE9, ATPR1, PR 1, PR1
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Gene
AT3G62600 | locus:2081725 | ATERDJ3B | -
Length: 2871  
Chromosome Location: Chr3: 23150779-23153649
Organism . Short Name: A. thaliana
TAIR Computational Description: DNAJ heat shock family protein;(source:Araport11)
TAIR Curator Summary: J domain protein localized in ER lumen. Can partially compensate for the growth defect in jem1 scj1 mutant yeast. Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity.
TAIR Short Description: DNAJ heat shock family protein
TAIR Aliases: ATERDJ3B, ERDJ3B
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Gene
AT1G55490 | locus:2193839 | CPN60B | chaperonin 60 beta
Length: 3699  
Chromosome Location: Chr1: 20715563-20719261
Organism . Short Name: A. thaliana
TAIR Computational Description: chaperonin 60 beta;(source:Araport11)
TAIR Curator Summary: encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro.
TAIR Short Description: chaperonin 60 beta
TAIR Aliases: CPN60B, Cpn60beta1, CPNB1, LEN1
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Gene
ATCG00710 | locus:504954694 | PSBH | photosystem II reaction center protein H
Length: 222  
Chromosome Location: ChrC: 74485-74706
Organism . Short Name: A. thaliana
TAIR Computational Description: photosystem II reaction center protein H;(source:Araport11)
TAIR Curator Summary: Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII.
TAIR Short Description: photosystem II reaction center protein H
TAIR Aliases: PSBH
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GO Term
GO:0072098 | anterior/posterior pattern specification involved in kidney development
Description: The developmental process that results in the creation of defined areas or spaces within the kidney along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate.
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Gene
AT2G46710 | locus:2062770 | ROPGAP3 | ROP guanosine triphosphatase (GTPase)-activating protein 3
Length: 3847  
Chromosome Location: Chr2: 19191247-19195093
Organism . Short Name: A. thaliana
TAIR Computational Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
TAIR Curator Summary: ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.
TAIR Short Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
TAIR Aliases: ROPGAP3
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Gene
AT3G11490 | locus:2080762 | AT3G11490 | -
Length: 2801  
Chromosome Location: Chr3: 3617264-3620064
Organism . Short Name: A. thaliana
TAIR Computational Description: rac GTPase activating protein;(source:Araport11)
TAIR Curator Summary: ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.
TAIR Short Description: rac GTPase activating protein
TAIR Aliases: ROPGAP4
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Gene
AT4G00450 | locus:2126056 | CCT | CENTER CITY
Length: 10436  
Chromosome Location: Chr4: 200874-211309
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA polymerase II transcription mediator;(source:Araport11)
TAIR Curator Summary: Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
TAIR Short Description: RNA polymerase II transcription mediators
TAIR Aliases: CCT, CRP, MED12
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GO Term
GO:0060825 | fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation
Description: The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands contributing to the anterior/posterior pattern of the neural plate.
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Gene
AT4G20270 | locus:2120412 | BAM3 | BARELY ANY MERISTEM 3
Length: 3541  
Chromosome Location: Chr4: 10949573-10953113
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. The mRNA is cell-to-cell mobile.
TAIR Short Description: Leucine-rich receptor-like protein kinase family protein
TAIR Aliases: BAM3
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Gene
AT3G58500 | locus:2076451 | PP2A-4 | protein phosphatase 2A-4
Length: 3975  
Chromosome Location: Chr3: 21635162-21639136
Organism . Short Name: A. thaliana
TAIR Computational Description: protein phosphatase 2A-4;(source:Araport11)
TAIR Curator Summary: Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
TAIR Short Description: protein phosphatase 2A-4
TAIR Aliases: PP2A-4
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Gene
AT1G59830 | locus:2025976 | PP2A-1 | protein phosphatase 2A-1
Length: 2127  
Chromosome Location: Chr1: 22020377-22022503
Organism . Short Name: A. thaliana
TAIR Computational Description: protein phosphatase 2A-2;(source:Araport11)
TAIR Curator Summary: Encodes one of the isoforms of the catalytic subunit of protein phosphatase 2A: AT1G59830/PP2A-1, AT1G10430/PP2A-2, At2g42500/PP2A-3, At3g58500/PP2A-4 [Plant Molecular Biology (1993) 21:475-485 and (1994) 26:523-528; Note that in more recent publications, there is mixed use of gene names for PP2A-3 and PP2A-4 - some refer to At2g42500 as PP2A-3 and some as PP2A-4].
TAIR Short Description: protein phosphatase 2A-2
TAIR Aliases: PP2A-1
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mRNA
AT1G05470.1
Length: 2988  
Chromosome Location: Chr1: 1607202-1611840
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mRNA
AT1G05470.2
Length: 3518  
Chromosome Location: Chr1: 1607227-1611815
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Gene
AT3G27060 | locus:2092030 | TSO2 | TSO MEANING 'UGLY' IN CHINESE 2
Length: 1780  
Chromosome Location: Chr3: 9979841-9981620
Organism . Short Name: A. thaliana
TAIR Computational Description: Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
TAIR Curator Summary: Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.
TAIR Short Description: Ferritin/ribonucleotide reductase-like family protein
TAIR Aliases: ATTSO2, TSO2
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Gene
AT4G35450 | locus:2117607 | AKR2 | ankyrin repeat-containing protein 2
Length: 2648  
Chromosome Location: Chr4: 16839526-16842173
Organism . Short Name: A. thaliana
TAIR Computational Description: ankyrin repeat-containing protein 2;(source:Araport11)
TAIR Curator Summary: A molecular chaperone that binds to the transmembrane domains of interacting proteins to prevent aggregation and direct them to the right location after translation.Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.
TAIR Short Description: ankyrin repeat-containing protein 2
TAIR Aliases: AFT, AKR2, AKR2A
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Gene
AT5G26920 | locus:2148548 | CBP60G | Cam-binding protein 60-like G
Length: 3099  
Chromosome Location: Chr5: 9475679-9478777
Organism . Short Name: A. thaliana
TAIR Computational Description: Cam-binding protein 60-like G;(source:Araport11)
TAIR Curator Summary: Encodes a calmodulin-binding protein CBP60g (calmodulin binding protein 60-like.g). The calmodulin-binding domain is located near the N-terminus; calmodulin binding is dependent on Ca(2+). Inducible by both bacterial pathogen and MAMP (microbe-associated molecular pattern) treatments. Bacterial growth is enhanced in cbp60g mutants. cbp60g mutants also show defects in salicylic acid (SA) accumulation and SA signaling.
TAIR Short Description: Cam-binding protein 60-like G
TAIR Aliases: CBP60G
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GO Term
GO:0007450 | dorsal/ventral pattern formation, imaginal disc
Description: The establishment, maintenance and elaboration of the dorsal/ventral axis of the imaginal disc. Imaginal disks are masses of hypodermic cells, carried by the larvae of some insects after leaving the egg, from which masses the wings and legs of the adult are subsequently formed.
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GO Term
GO:0007633 | pattern orientation
Description: The actions or reactions of an individual in response to the orientation of a visual pattern. This is exemplified by some classes of insects which are able to detect and learn the orientation of a set of stripes and subsequently behaviorally discriminate between horizontal, vertical or 45 degree stripes.
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GO Term
GO:0048190 | wing disc dorsal/ventral pattern formation
Description: The establishment, maintenance and elaboration of the dorsal/ventral axis of the wing disc, a precursor to the adult wing.
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Gene
AT3G49620 | locus:2114683 | DIN11 | DARK INDUCIBLE 11
Length: 3304  
Chromosome Location: Chr3: 18393747-18397050
Organism . Short Name: A. thaliana
TAIR Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
TAIR Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
TAIR Aliases: DIN11
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Gene
AT1G05830 | locus:2198743 | ATX2 | trithorax-like protein 2
Length: 7780  
Chromosome Location: Chr1: 1754130-1761909
Organism . Short Name: A. thaliana
TAIR Computational Description: trithorax-like protein 2;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.
TAIR Short Description: trithorax-like protein 2
TAIR Aliases: ATX2, SDG30
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Gene
AT3G48560 | locus:2114525 | CSR1 | chlorsulfuron/imidazolinone resistant 1
Length: 2467  
Chromosome Location: Chr3: 18001283-18003749
Organism . Short Name: A. thaliana
TAIR Computational Description: chlorsulfuron/imidazolinone resistant 1;(source:Araport11)
TAIR Curator Summary: Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding.
TAIR Short Description: chlorsulfuron/imidazolinone resistant 1
TAIR Aliases: AHAS, ALS, CSR1, IMR1, TZP5
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Gene
AT5G04620 | locus:2184397 | BIOF | biotin F
Length: 3059  
Chromosome Location: Chr5: 1327093-1330151
Organism . Short Name: A. thaliana
TAIR Computational Description: biotin F;(source:Araport11)
TAIR Curator Summary: The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.
TAIR Short Description: biotin F
TAIR Aliases: ATBIOF, BIO4, BIOF
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GO Term
GO:1901576 | organic substance biosynthetic process
Description: The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon.
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AGB1 appears to integrate pathogen-associated molecular pattern perception into downstream ROS production, and also to transmit the EF-Tu signal to the defense response, leading to reduced transformation by A. tumefaciens.
Organism: A. thaliana
Gene: AGB1
PubMed Id: 19129659
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GO Term
GO:1901575 | organic substance catabolic process
Description: The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon.
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Gene
AT2G18510 | locus:2046298 | emb2444 | embryo defective 2444
Length: 2660  
Chromosome Location: Chr2: 8030960-8033619
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary: Essential gene (embryo lethal) that is similar to component of splicosome. Regulates embryonic pattern formation through Pol II-Mediated transcription of WOX2 an PIN7 (DOI:10.1016/j.isci.2019.09.004). JANUS positively regulates PLT1 expression in the root meristem by recruiting RNA polymerase II (Pol II) to PLT1 and by interacting with PLT1. Nuclear accumulation of JANUS in root meristem depends on IMB4. (DOI:10.1105/tpc.20.00108 )
TAIR Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases: EMB2444, JANUS
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Gene
AT3G20840 | locus:2091891 | PLT1 | PLETHORA 1
Length: 3250  
Chromosome Location: Chr3: 7300444-7303693
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: AtPLT1, PLT1
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Gene
AT4G32040 | locus:2116632 | KNAT5 | KNOTTED1-like homeobox gene 5
Length: 2393  
Chromosome Location: Chr4: 15493989-15496381
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox protein knotted-1-like 5;(source:Araport11)
TAIR Curator Summary: A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.
TAIR Short Description: KNOTTED1-like homeobox gene 5
TAIR Aliases: KNAT5
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Gene
AT1G51190 | locus:2008216 | PLT2 | PLETHORA 2
Length: 3443  
Chromosome Location: Chr1: 18977176-18980618
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: PLT2
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Protein Domain
IPR006616
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GO Term
GO:0007387 | anterior compartment pattern formation
Description: The process giving rise to specification of cell identity in the anterior compartments of the segmented embryo.
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GO Term
GO:0010051 | xylem and phloem pattern formation
Description: The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
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GO Term
GO:0021797 | forebrain anterior/posterior pattern specification
Description: The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain.
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GO Term
GO:0072048 | renal system pattern specification
Description: Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate into the anatomical structures of the renal system.
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GO Term
GO:0035018 | adult chitin-based cuticle pattern formation
Description: The process that gives rise to the patterns of cell differentiation that will arise in the chitin-based adult cuticle. An example of this process is adult chitin-based cuticle pattern formation in Drosophila melanogaster.
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GO Term
GO:0072196 | proximal/distal pattern formation involved in pronephric nephron development
Description: The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis of the pronephros.
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Ontology Term Synonym
Ontology Term Synonym
Name: pronephros proximal/distal pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: kidney anterior/posterior pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: kidney anterior/posterior pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: adult cuticle pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: renal system pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: forebrain anterior-posterior pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: forebrain dorsal-ventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: forebrain dorsoventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: cerebral cortex pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: cerebral cortex pattern biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: anterior compartment pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: vascular tissue pattern formation
Type: synonym
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