help  | faq  | software  | BAR

Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 301 to 400 out of 406 for Microbe-associated molecular pattern

Category restricted to Generif (x)

<< First    < Previous  |  Next >    Last >>
0.11s

Categories

Category: Generif
« show all
Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests a role for TRIP-1 in the molecular mechanisms of brassinosteroid-regulated plant growth and development, possibly as a cytoplasmic substrate of the BRI1 receptor kinase.
Organism: A. thaliana
Gene: TRIP-1
PubMed Id: 15998311
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our findings may strengthen the understanding of the molecular function of RCI2A in cold-stress tolerance. RCI2A could be used to improve abiotic stress tolerance in agronomic crops
Organism: A. thaliana
Gene: RCI2A
PubMed Id: 25260337
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These findings suggest that endomitosis and endoreplication are regulated by similar molecular mechanisms, in which two related proteins, GIG1 and UVI4, may inhibit APC/C in different ways.
Organism: A. thaliana
Gene: UVI4-LIKE
PubMed Id: 22899078
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study suggests a role for TRIP-1 in the molecular mechanisms of brassinosteroid-regulated plant growth and development, possibly as a cytoplasmic substrate of the BRI1 receptor kinase.
Organism: A. thaliana
Gene: BRI1
PubMed Id: 15998311
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our data demonstrate a role for COI1 in disease resistance independent of Jasmonic Acid signaling and provide a molecular link between the JA and NB-LRR signaling pathways.
Organism: A. thaliana
Gene: COL1
PubMed Id: 23093946
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results indicate that ligand perception in FLS2 is a complex molecular process that involves LRRs from both the outermost and innermost LRRs of the FLS2 ectodomain.
Organism: A. thaliana
Gene: FLS2
PubMed Id: 22634763
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: molecular dynamics simulations in conjunction with umbrella sampling were used to calculate the binding free energy for the wild type UVR8 dimer and three of its mutants
Organism: A. thaliana
Gene: UVR8
PubMed Id: 23745796
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: higher-order complex formation is a general and essential molecular mechanism for plant MADS box protein functioning and SEP3 'glue' protein plays a pivotal role in mediating multimerization
Organism: A. thaliana
Gene: SEP3
PubMed Id: 19243611
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: this Arabidopsis PhyB structure should enable molecular insights into plant Phy signaling and provide an essential scaffold to redesign their activities for agricultural benefit and as optogenetic reagents
Organism: A. thaliana
Gene: PHYB
PubMed Id: 24982198
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Based on our molecular and biochemical evidence, we propose that the UVR8-COP1 affinity in plants critically determines the photomorphogenic UV-B signal transduction coupling with UVR8-mediated UV-B light perception.
Organism: A. thaliana
Gene: COP1
PubMed Id: 24651064
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Ion channel activity of ABCB19 that is blocked by NPPB, a compound that can now be considered an inhibitor of polar auxin transport with a defined molecular target.
Organism: A. thaliana
Gene: ABCB19
PubMed Id: 25324509
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The potential target genes of AtDREB1A transcription factor in transgenic peanut lines during drought stress were identified, which helped in understanding the molecular mechanisms of DREB-regulated stress responses.
Organism: A. thaliana
Gene: DREB1A
PubMed Id: 31071165
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Using molecular dynamics simulations, the complete abscisic acid recognition pathways by two subtype receptors, PYL5 and PYL10, and a modified PYL5 receptor through tyrosine nitration, have been established.
Organism: A. thaliana
Gene: PYL10
PubMed Id: 30686665
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SEU and ANT are part of a complex and robust molecular system that coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium.
Organism: A. thaliana
Gene: ANT
PubMed Id: 18184731
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Using molecular dynamics simulations, the complete abscisic acid recognition pathways by two subtype receptors, PYL5 and PYL10, and a modified PYL5 receptor through tyrosine nitration, have been established.
Organism: A. thaliana
Gene: PYL5
PubMed Id: 30686665
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Findings identify SOD7 and DPA4 as negative regulators of seed size and define the genetic and molecular mechanisms of SOD7, DPA4, and KLU in seed size control. [DPA4]
Organism: A. thaliana
Gene: DPA4
PubMed Id: 25783029
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SGS3 associates with AGO1-RISC via the double-stranded RNA formed by the 3'-terminal nucleotides of 22-nt miR173 and corresponding target RNA, which probably protrudes from the AGO1-RISC molecular surface
Organism: A. thaliana
Gene: SGS3
PubMed Id: 23417299
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: data suggest that overall ClpC as a stromal molecular chaperone plays a vital role in chloroplast function and leaf development and is likely involved in photosystem biogenesis. [clpC1]
Organism: A. thaliana
Gene: CLPC1
PubMed Id: 15563614
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Based on our molecular and biochemical evidence, we propose that the UVR8-COP1 affinity in plants critically determines the photomorphogenic UV-B signal transduction coupling with UVR8-mediated UV-B light perception.
Organism: A. thaliana
Gene: UVR8
PubMed Id: 24651064
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SEU and ANT are part of a complex and robust molecular system that coordinates patterning cues and cellular proliferation along the three positional axes of the developing gynoecium.
Organism: A. thaliana
Gene: SEU
PubMed Id: 18184731
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: our results illuminate a molecular framework by which the PIF4 transcriptional regulator integrates its action into the auxin pathway through activating the expression of specific auxin biosynthetic gene (YUCCA8).
Organism: A. thaliana
Gene: PIF4
PubMed Id: 22479194
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SEC8 copurifies in a high molecular mass fraction of 900 kD, interacts with SEC6, and functions as a subunit in a exocyst complex that plays important roles in morphogenesis.
Organism: A. thaliana
Gene: SEC8
PubMed Id: 18492870
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: TCTP has molecular properties similar to animal TCTPs, such as tubulin- and calcium-binding, and that it functions in ABA-mediated stomatal movement, in addition to regulating the growth of plants.
Organism: A. thaliana
Gene: TCTP
PubMed Id: 22610367
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These results suggest that the AtPP2-A1 molecular chaperone protein plays a critical role in the Arabidopsis defense system against diverse external stresses including fungal pathogenic attack and heat shock.
Organism: A. thaliana
Gene: PP2-A1
PubMed Id: 24269669
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The stoichiometry of the cellulose synthase catalytic subunits (CESAs) in the primary cell wall CSC was determined and CESA1, CESA3, and CESA6 are present in a 1:1:1 molecular ratio.
Organism: A. thaliana
Gene: CESA1
PubMed Id: 25352273
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The stoichiometry of the cellulose synthase catalytic subunits (CESAs) in the primary cell wall CSC was determined and CESA1, CESA3, and CESA6 are present in a 1:1:1 molecular ratio.
Organism: A. thaliana
Gene: CEV1
PubMed Id: 25352273
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SEC10 copurifies in a high molecular mass fraction of 900 kD, interacts with SEC15b, and functions as a subunit in a exocyst complex that plays important roles in morphogenesis.
Organism: A. thaliana
Gene: SEC10
PubMed Id: 18492870
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: EXO70A1 copurifies in a high molecular mass fraction of 900 kD, interacts with SEC3a, and functions as a subunit in a exocyst complex that plays important roles in morphogenesis.
Organism: A. thaliana
Gene: EXO70A1
PubMed Id: 18492870
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The GI-SOS2 interaction introduces a higher order regulatory circuit that can explain in molecular terms, the long observed connection between floral transition and adaptive environmental stress tolerance in Arabidopsis.
Organism: A. thaliana
Gene: SOS2
PubMed Id: 23322040
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The stoichiometry of the cellulose synthase catalytic subunits (CESAs) in the primary cell wall CSC was determined and CESA1, CESA3, and CESA6 are present in a 1:1:1 molecular ratio.
Organism: A. thaliana
Gene: CESA6
PubMed Id: 25352273
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: results demonstrated that, like KEULE, SEC6 plays a physiological role in cytokinesis, and the SEC6-KEULE interaction may serve as a novel molecular linkage between arriving vesicles and membrane fusion
Organism: A. thaliana
Gene: KEU
PubMed Id: 23702595
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The GI-SOS2 interaction introduces a higher order regulatory circuit that can explain in molecular terms, the long observed connection between floral transition and adaptive environmental stress tolerance in Arabidopsis.
Organism: A. thaliana
Gene: GI
PubMed Id: 23322040
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SEC6 copurifies in a high molecular mass fraction of 900 kD, interacts with SEC8, and functions as a subunit in a exocyst complex that plays important roles in morphogenesis.
Organism: A. thaliana
Gene: SEC6
PubMed Id: 18492870
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: results demonstrated that, like KEULE, SEC6 plays a physiological role in cytokinesis, and the SEC6-KEULE interaction may serve as a novel molecular linkage between arriving vesicles and membrane fusion
Organism: A. thaliana
Gene: SEC6
PubMed Id: 23702595
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study reveals the intertwined regulation of pattern recognition receptors (PRR) & receptor-like cytoplasmic kinase (RLCK) complex activation by protein phosphorylation and ubiquitination, and shows that ligand-induced monoubiquitination contributes to the release of BIK1 family RLCKs from the PRR complex and activation of PRR signalling
Organism: A. thaliana
Gene: BIK1
PubMed Id: 32404997
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These results provide new insights into the molecular mechanism underlying formation of the Cys synthase complex and provide a structural basis for the biochemical regulation of Cys biosynthesis in plants.
Organism: A. thaliana
Gene: OASB
PubMed Id: 17194764
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: characterization at the molecular and functional level, the carboxy-terminal part of Arabidopsis BRM. We have found three DNA-binding regions that bind various free DNA and nucleosomal probes with different specificity
Organism: A. thaliana
Gene: BRM
PubMed Id: 17825834
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: BRCA2(IV)
PubMed Id: 21149701
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study provides an insight into the molecular mechanism for understanding how the CHD3-like chromatin remodeling protein MOM1 cooperates with the SUMO E3 ligase-like proteins to regulate transcriptional silencing. [SUMO1]
Organism: A. thaliana
Gene: SUMO1
PubMed Id: 30092097
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: GTGs contribute to fertility, plant growth, and responses to light and sugars, but our molecular and genetic data using these mutants indicate that they respond normally in classic ABA responses.
Organism: A. thaliana
Gene: GTG2
PubMed Id: 23001037
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: BRCA2B
PubMed Id: 21149701
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study provides the molecular evidence showing that the BRCA2-RAD51 complex, known for its function in HR, also plays a direct and specific role in transcription regulation during plant immune responses.
Organism: A. thaliana
Gene: RAD51
PubMed Id: 21149701
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The study provides an insight into the molecular mechanism for understanding how the CHD3-like chromatin remodeling protein MOM1 cooperates with the SUMO E3 ligase-like proteins to regulate transcriptional silencing. [SUMO2]
Organism: A. thaliana
Gene: SUMO2
PubMed Id: 30092097
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AtULCS1 encodes for a novel low molecular weight WDR protein, which interacts with the E3 DWD ligase complex subunit DDB1a. Downregulation of AtULCS1 causes pleiotropic phenotypes during plant development. [ULCS1]
Organism: A. thaliana
Gene: AT5G66240
PubMed Id: 26940493
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: GTGs contribute to fertility, plant growth, and responses to light and sugars, but our molecular and genetic data using these mutants indicate that they respond normally in classic ABA responses.
Organism: A. thaliana
Gene: GTG1
PubMed Id: 23001037
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These findings reveal distinct relationships between GL2 and single MYBs in the regulation of trichome vs root hair development, and provide new insights into the molecular mechanism of epidermal patterning.
Organism: A. thaliana
Gene: GL2
PubMed Id: 19878461
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The results revealed clear differences in the MIR168 promoter sequence of monocot and dicot plant species. Moreover, the pattern of MIR168 promoter expression differed between monocots and dicots. These results suggest that, unlike that of miR168, the MIR168 promoter is not conserved in monocots and dicots.
Organism: A. thaliana
Gene: MIR168B
PubMed Id: 27323093
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the recognition of the target residue by the canonical binding cleft of the DDL FHA domain as the key molecular event to instate FHA domain-mediated protein-protein interaction in plant miRNA processing
Organism: A. thaliana
Gene: DDL
PubMed Id: 23313986
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The molecular structures of zinc-binding- HMA4 and -HMA7 proteins have been determined and compared in order to provide insights into the structural basis for the differences in their metal binding properties.
Organism: A. thaliana
Gene: HMA2
PubMed Id: 19883117
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: findings provide clear evidence that the Mg-chelatase-catalyzed Mg-ProtoIX production is distinct from ABA signaling, giving information to understand the mechanism by which the two cellular processes differs at the molecular level
Organism: A. thaliana
Gene: GUN5
PubMed Id: 23011401
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: It was proposed that MYB96 is a molecular link that mediates abscisic acid-auxin cross talk in drought stress response and lateral root growth, providing an adaptive strategy under drought stress conditions.
Organism: A. thaliana
Gene: MYB96
PubMed Id: 19625633
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the recognition of the target residue by the canonical binding cleft of the DDL FHA domain as the key molecular event to instate FHA domain-mediated protein-protein interaction in plant miRNA processing
Organism: A. thaliana
Gene: DCL1
PubMed Id: 23313986
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The data support the hypothesis that the opposite root system phenotypes of hy5 single and hy5 hyh double mutants represent the morphological response to a quantitative gradient in the same molecular process.
Organism: A. thaliana
Gene: HYH
PubMed Id: 17121469
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: THA8 belongs to a subfamily of plant pentatricopeptide repeat proteins with only four pentatricopeptide repeat motifs and little else. THA8 is the first member of this subfamily with a defined molecular function.
Organism: A. thaliana
Gene: EMB3123
PubMed Id: 22495966
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: studies reveal a molecular network controlled by STK that regulates cell wall properties of the seed coat, demonstrating that developmental regulators controlling organ identity also coordinate specific aspects of cell wall characteristics.
Organism: A. thaliana
Gene: STK
PubMed Id: 27624758
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The molecular structural differences of ABP1 found between the species and auxin types indicate that this auxin-binding protein shows functional specificities in dicots and monocots, as well as in auxin type binding.
Organism: A. thaliana
Gene: ABP1
PubMed Id: 28973586
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The data support the hypothesis that the opposite root system phenotypes of hy5 single and hy5 hyh double mutants represent the morphological response to a quantitative gradient in the same molecular process.
Organism: A. thaliana
Gene: HY5
PubMed Id: 17121469
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results reveal a genetic and molecular mechanism by which the transcription factors MYC3/4 recruit KIX8/9 and PPD1/2 to the promoter of GIF1 and repress its expression, thereby determining seed size in Arabidopsis.
Organism: A. thaliana
Gene: AN3
PubMed Id: 32296056
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AtNRT2.5 is predominantly expressed in roots of nitrate-deprived WT plants as a 150 kDa molecular complex with AtNAR2.1 which is the major contributor to constitutive high-affinity nitrate influx in Arabidopsis thaliana. [NAR2.1]
Organism: A. thaliana
Gene: WR3
PubMed Id: 25474587
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: At5g51970 possesses the molecular characteristics of an SORBITOL DEHYDROGENASE (SDH). SDH is cytosolically localized. In the presence of NAD+, recombinant SDH exhibited greatest oxidative activity with sorbitol, ribitol and xylitol as substrates.
Organism: A. thaliana
Gene: AT5G51970
PubMed Id: 23498864
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: We have established a previously unrecognized molecular connection between the downregulation of RPS1 expression in chloroplast and the activation of HsfA2-dependent heat-responsive genes in nucleus, which is required for heat tolerance in higher plants.
Organism: A. thaliana
Gene: HSFA2
PubMed Id: 22570631
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These findings define the AtbZIP59-LBD complex as a critical regulator of auxin-induced cell fate change during callus formation, which provides a new insight into the molecular regulation of plant regeneration and possible developmental programs.
Organism: A. thaliana
Gene: AT2G31370
PubMed Id: 29358751
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: These findings define the AtbZIP59-LBD complex as a critical regulator of auxin-induced cell fate change during callus formation, which provides a new insight into the molecular regulation of plant regeneration and possible developmental programs.
Organism: A. thaliana
Gene: LBD16
PubMed Id: 29358751
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: ECT proteins, ECT1 and ECT2, are molecular components in the CBL-CIPK calcium signaling pathways. They contain a highly conserved 180-amino acid region, which is involved in mediating the nuclear localization of the ECT proteins.[ECT1]
Organism: A. thaliana
Gene: ECT1
PubMed Id: 16113215
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.[SGT1]
Organism: A. thaliana
Gene: SGT1B
PubMed Id: 26728313
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: identify BnMPK4 interacting proteins in the absence and presence of flg22. Quantitative proteomic analysis revealed a shift in the MPK4-associated protein network, providing insight into the molecular functions of MPK4 at the systems level.
Organism: A. thaliana
Gene: MPK4
PubMed Id: 30632760
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Molecular characterization of the GH3-LIKE DEFENSE GENE 1 (GDG1), a member of the GH3-like gene family, shows that GDG1 is an important component of salicylic acid mediated defense against the bacterial pathogen P. syringae.[GDG1]
Organism: A. thaliana
Gene: PBS3
PubMed Id: 17521413
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: We have established a previously unrecognized molecular connection between the downregulation of RPS1 expression in chloroplast and the activation of HsfA2-dependent heat-responsive genes in nucleus, which is required for heat tolerance in higher plants
Organism: A. thaliana
Gene: RPS1
PubMed Id: 22570631
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AtBMI1C is an imprinted gene expressed from the maternal allele in the endosperm but biallelically expressed in stamen. It was found that the characteristic expression pattern of AtBMI1C is the result of a complex epigenetic regulation that involves CG DNA methylation, RNA-directed non-CG DNA methylation (RdDM), and PcG activity. [BMI1C]
Organism: A. thaliana
Gene: AT3G23060
PubMed Id: 21914649
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: ECT proteins, ECT1 and ECT2, are molecular components in the CBL-CIPK calcium signaling pathways. They contain a highly conserved 180-amino acid region, which is involved in mediating the nuclear localization of the ECT proteins. [ECT2]
Organism: A. thaliana
Gene: ECT2
PubMed Id: 16113215
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PYK10 is a beta-glucosidase that is localized in ER bodies; PBP1 may act like a molecular chaperone that facilitates the correct polymerization of PYK10, when tissues are damaged and subcellular structures are destroyed by pests.[PBP1]
Organism: A. thaliana
Gene: PBP1
PubMed Id: 15919674
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed show that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.
Organism: A. thaliana
Gene: TIR1
PubMed Id: 26728313
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The vernalization insensitivity caused by mutant COLDAIR was rescued by the ectopic expression of the wild-type COLDAIR. Our study reveals the molecular framework in which COLDAIR lncRNA mediates the PRC2-mediated repression of FLC during vernalization.
Organism: A. thaliana
Gene: FLC
PubMed Id: 28759577
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This study showed show that increased temperature promotes rapid accumulation of the TIR1 auxin co-receptor, an effect that is dependent on the molecular chaperone HSP90, and that HSP90 and SGT1 integrate temperature and auxin signaling.
Organism: A. thaliana
Gene: HSP90.1
PubMed Id: 26728313
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study unravels the mechanism underlying this shift of the phyA action peak from red to far-red light and show that it relies on specific molecular interactions rather than on intrinsic changes to phyA's spectral properties.
Organism: A. thaliana
Gene: PHYA
PubMed Id: 21884939
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Biochemical evidence revealed that SES1 functions as an important molecular chaperone to alleviate salt-induced endoplasmic reticulum (ER) stress. Furthermore, the ER stress sensor basic leucine zipper factor17 transactivated SES1 by binding directly to its promoter region.
Organism: A. thaliana
Gene: BZIP17
PubMed Id: 30287478
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work establishes a functional link between the dynamics and the lateral polarity of IRT1 and the transport of its substrates, and identifies a molecular mechanism driving polar localization of a cell surface protein in plants.
Organism: A. thaliana
Gene: IRT1
PubMed Id: 24843126
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Biochemical evidence revealed that SES1 functions as an important molecular chaperone to alleviate salt-induced endoplasmic reticulum (ER) stress. Furthermore, the ER stress sensor basic leucine zipper factor17 transactivated SES1 by binding directly to its promoter region.
Organism: A. thaliana
Gene: AT4G29520
PubMed Id: 30287478
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways. Here, we have further shown the genetic interactions between these two proteins in flowering time and lateral root development
Organism: A. thaliana
Gene: SPA1
PubMed Id: 21512327
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data show that the mature form of the rAtAP A1 was a heterodimeric glycosylated protein with a molecular mass of 47kDa consisting of heavy and light chain components, approx. 32 and 16kDa, respectively, linked by disulfide bonds.
Organism: A. thaliana
Gene: APA1
PubMed Id: 18796341
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways. Here, we have further shown the genetic interactions between these two proteins in flowering time and lateral root development
Organism: A. thaliana
Gene: MYC2
PubMed Id: 21512327
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows pollen tube (PT) reception and powdery mildew (PM) infection share molecular components; NTA, discovered in context of PM resistance, and FERONIA control PT reception; fer mutants also display PM resistance revealing a new function for FER
Organism: A. thaliana
Gene: MLO7
PubMed Id: 21071669
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The authors provided direct evidence that Arabidopsis SAC3B is a target of CML19 (centrin 2) protein, identified SAC3B binding site to CML19 and focused on molecular characterization of the interaction between CML19 and the corresponding 26-residues SAC3B protein.
Organism: A. thaliana
Gene: SAC3B
PubMed Id: 31860002
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: study shows pollen tube (PT) reception and powdery mildew (PM) infection share molecular components; NORTIA, discovered in context of PM resistance, and FER control PT reception; fer mutants also display PM resistance revealing a new function for FER
Organism: A. thaliana
Gene: FER
PubMed Id: 21071669
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PCH1 (PHOTOPERIODIC CONTROL OF HYPOCOTYL 1) and PCHL (PCH1-LIKE) provide a node for the molecular integration of different light qualities by regulation of phyB dark reversion, allowing plants to adapt growth and development to the ambient environment. [PCHL]
Organism: A. thaliana
Gene: AT4G34550
PubMed Id: 29263319
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AtRAN1 plays an important role in vegetative growth and the molecular improvement of stress tolerance in Arabidopsis. AtRAN1 overexpression promoted vegetative growth and enhanced abiotic tolerance, while the atran1 atran3 double mutant showed higher freezing sensitivity than WT.
Organism: A. thaliana
Gene: RAN-1
PubMed Id: 27258048
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A description of the molecular and phenotypic characterization of a large series of mutant alleles of the ABA1 gene, which cause different degrees of ABA deficiency, four of them previously isolated and the remaining five novel, is presented.
Organism: A. thaliana
Gene: ABA1
PubMed Id: 15983017
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system. It is part of a higher molecular weight complex and is essential for translation of the D1 encoding psbA mRNA. [HCF173]
Organism: A. thaliana
Gene: HCF173
PubMed Id: 17435084
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The data support a hypothesized ancestral role for CRC in carpel development and suggest that novel roles for CRC orthologues in monocots and in core eudicots resulted principally from molecular changes other than those affecting their coding sequences.
Organism: A. thaliana
Gene: CRC
PubMed Id: 17650514
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SERRATED LEAVES AND EARLY FLOWERING (SEF) gene represses flowering at least in part by positively regulating the expression of the FLC and MAF4 genes in A. thaliana. It interacts with ATARP6 and PIE1 to form a molecular complex. [SEF]
Organism: A. thaliana
Gene: SEF
PubMed Id: 17142478
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Beyond demonstrating that XRN4 is a major player in multiple decay pathways, this study identified intriguing molecular impacts of the enzyme, including those that led to new insights about mRNA decay and discovery of functional contributions at the whole-plant level
Organism: A. thaliana
Gene: XRN4
PubMed Id: 31428786
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: LOV2 domain acts as a major light-regulated molecular switch of casein phosphorylation, & it acts as an attenuator of the light activation of the kinase by LOV2. LOV1 domain acts as an attenuator of the light activation of the kinase by LOV2.
Organism: A. thaliana
Gene: PHOT1
PubMed Id: 16150710
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SAP acts in a common pathway with KIX8/9 and PPD to control organ growth by regulating meristemoid cell proliferation. Thus, these findings reveal a molecular mechanism by which SAP targets the KIX-PPD repressor complex for degradation to regulate meristemoid cell proliferation and organ size.
Organism: A. thaliana
Gene: SAP
PubMed Id: 29401459
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the mutations of key amino acids for the function of LEC1 in planta (D86K) prevented the interaction with LEC2. These results provide molecular evidences for the binding of LEC1 to B2-domain containing transcription factors, to form heteromers, involved in the control of gene expression.
Organism: A. thaliana
Gene: LEC1
PubMed Id: 29580949
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the mutations of key amino acids for the function of LEC1 in planta (D86K) prevented the interaction with LEC2. These results provide molecular evidences for the binding of LEC1 to B2-domain containing transcription factors, to form heteromers, involved in the control of gene expression.
Organism: A. thaliana
Gene: LEC2
PubMed Id: 29580949
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: In this work, we performed large-scale all-atom molecular dynamics simulations of the CcoNOPM complex to further characterize the interactions between subunit M and the core subunits and to determine whether the presence of the fourth subunit influences the water/proton channels previously described for the core complex.
Organism: A. thaliana
Gene: CPD
PubMed Id: 28694191
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Molecular dynamics simulations have been applied to two different PYL2-HAB1 complex heterodimer systems representing normal and magnesium deficient conditions. The heterodimer conformation and stability were delineated at high temperatures mimicking heat stress. Results showed that the thermostability of the heat stress response heterodimer was significantly dependent on the magnesium.
Organism: A. thaliana
Gene: PYL2
PubMed Id: 29437392
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Molecular dynamics simulations have been applied to two different PYL10-HAB1 complex heterodimer systems representing normal and magnesium deficient conditions. The heterodimer conformation and stability were delineated at high temperatures mimicking heat stress. Results showed that the thermostability of the heat stress response heterodimer was significantly dependent on the magnesium.
Organism: A. thaliana
Gene: PYL10
PubMed Id: 29437392
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: these findings suggest that regulation of flowering by gibberellin (GA) signaling in leaves under long days is mediated through repression of DELLA proteins on CO, providing a molecular link between DELLA proteins, key components in GA signaling pathway, and CO, a critical flowering activator in photoperiod signaling pathway.
Organism: A. thaliana
Gene: CO
PubMed Id: 26801684
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Molecular dynamics simulations have been applied to two different PYL10-HAB1 complex heterodimer systems representing normal and magnesium deficient conditions. The heterodimer conformation and stability were delineated at high temperatures mimicking heat stress. Results showed that the thermostability of the heat stress response heterodimer was significantly dependent on the magnesium.
Organism: A. thaliana
Gene: HAB1
PubMed Id: 29437392
•
•
•
•
•





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom